MmuEX0048670 @ mm10
Exon Skipping
Gene
ENSMUSG00000022858 | Tra2b
Description
transformer 2 beta homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:106016]
Coordinates
chr16:22255220-22259622:-
Coord C1 exon
chr16:22258865-22259622
Coord A exon
chr16:22258164-22258228
Coord C2 exon
chr16:22255220-22255320
Length
65 bp
Sequences
Splice sites
3' ss Seq
TAAATATTGTTTTCTTCTAGTGT
3' ss Score
8.56
5' ss Seq
ATAGTTAAG
5' ss Score
-13.35
Exon sequences
Seq C1 exon
TCCAAAACTACGAAAAGGGATTTTTTTTTCTAGTTTCAGTTTTGGCACTGGATTTTATCCTGGAGTTTTAAAATATTCTTCATCCTGTTCTTTTTCTATTAAGGTTAATGTTGAAGAAGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTATAAATGAGTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAATAAAAGAAAGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGAAATAAAAATGAAGTTAAGATAAGAAGTAATCTGGAATCAGAAAGCACTACGCTAAGTAATTACTAGTCTGTTTATGTGTCCCTGTATATTTTGCTAAACATGCATGCATTATTTGTTTAATAGAAGAAGTATATACAGGGTAAAGAAGTGACTTCCAAGGGAATCGTTTAAATTAG
Seq A exon
TGTGCTACTCCAACTGAGGAAAAAAACCACACAGTTCCTGTCTATGTTTTGACTGATTATATATA
Seq C2 exon
AAAGGTGGAAGAAAAAACCAATTGATTCATGTCAGTTGAAGCAATGAAACCATTATACCAGGTATCCTCAATTCTGCCCTCACTTATGTTTTCTTATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022858-'9-5,'9-4,10-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAAACATGCATGCATTATTTGT
R:
AAGTGAGGGCAGAATTGAGGA
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types