MmuALTD0015072-5/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20658426-20668565:+
Coord C1 exon
chrX:20658426-20658526
Coord A exon
chrX:20658527-20658728
Coord C2 exon
chrX:20668449-20668565
Length
202 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TGGCCTGTCTTTCTCCCCAGATG
3' ss Score
12.79
Exon sequences
Seq C1 exon
CTCTGGTTCTTTTTGCACGATCGAGGTGGTTTGCTCTTCCGTTGCCCTGTGGCTTCGGCTTGTCTCCAGAAGGAAGGCGAGGCTTCCGCCCAGCACTGGGG
Seq A exon
GTGAGCGGGAGCACATTTCCCCCAAGCCTCTGGACAGCATTTGGAAGAGGGTGCTTCCCTAATTCCAACTTCAGGGATCCCTAATGGGCATGTTTGGAGGTTGTGGGGCCCGGGTGGCATTCAGTGGGTGTCTACTTTTGAGGAGACACTTAGGAAGCGGTGCTTGGGGATTCGGGTGGCATTTAGGAGTCTGTTTTATGAG
Seq C2 exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGCTCCCCTGCACAGTCTGCGCTGTCCGAAGTGTCCTCAGTGCCAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-0-9,1-9,2-9,3-9,4-9-5/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTTCTTTTTGCACGATCGA
R:
GGTTGGCACTGAGGACACTTC
Band lengths:
214-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types