MmuEX6043835 @ mm10
Exon Skipping
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20658326-20668750:+
Coord C1 exon
chrX:20658326-20658526
Coord A exon
chrX:20668449-20668565
Coord C2 exon
chrX:20668692-20668750
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGTCTTTCTCCCCAGATG
3' ss Score
12.79
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GAGGCGCAGAAGTAGAGAGAAATGCCCCTCTATTCAGGCGTCTATGGTATACCCCAGACCCGGCCCTCTAAGGCCCCCGCGCTTCCGAGCTCCGCGCAAACTCTGGTTCTTTTTGCACGATCGAGGTGGTTTGCTCTTCCGTTGCCCTGTGGCTTCGGCTTGTCTCCAGAAGGAAGGCGAGGCTTCCGCCCAGCACTGGGG
Seq A exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGCTCCCCTGCACAGTCTGCGCTGTCCGAAGTGTCCTCAGTGCCAACCAAC
Seq C2 exon
GGAATGGCGAAGAACGGCAGTGAAGCAGACATAGACGAGAGCCTTTACTCCCGGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-'11-16,'11-9,22-16=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.450
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCGCAGAAGTAGAGAGAA
R:
AGGCTCTCGTCTATGTCTGCT
Band lengths:
245-362
Functional annotations
There are 1 annotated functions for this event
PMID: 7673335
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Two dimensional phosphopeptide mapping, alanine scanning, comigration in gel electrophoresis, mutation analysis, protein kinase assay. ELM ID: ELMI003216; ELM sequence: MSSSPLSK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types