RnoEX6024984 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1736790-1741701:-
Coord C1 exon
chrX:1741470-1741701
Coord A exon
chrX:1736991-1737107
Coord C2 exon
chrX:1736790-1736848
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATCCTGTCTTTCTTCCTTAGATG
3' ss Score
10.88
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CAGGGTTTTGTTCCGGCCTTGGGCTCTGCCGCCGCCATCTTGTGTCGGCTGCTGGGGTGAAGGAGGGTGTCAAGGAAGACCACAACCACCGCGGTCGGGGGAGGAGAAGGCGACAGTGATCCTAGCTGGCCCAGGCGGCAGGGAGGAGAAGGAGAAAGAGGAGGGTGGCGGCCGAGCTTGACTTCGGCTCCTTGAGGAGTTGGCGGCGGCACGACCCGGGGAACCGGCATTG
Seq A exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCAGGTTCTAACTGCTCCTCTGCACAGTCAGTGCTGTCCGAAGTGTCTTCAGTGCCAACCAAC
Seq C2 exon
GGAATGGCGAAGAACGGCAGTGAAGCAGACATAGACGAGAGCCTTTACTCCCGGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'9-4,'9-2,13-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.949 C2=0.450
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTGTTCCGGCCTTGGG
R:
TCTGCTTCACTGCCGTTCTTC
Band lengths:
258-375
Functional annotations
There are 1 annotated functions for this event
PMID: 7673335
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Two dimensional phosphopeptide mapping, alanine scanning, comigration in gel electrophoresis, mutation analysis, protein kinase assay. ELM ID: ELMI003216; ELM sequence: MSSSPLSK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]