RnoEX0095589 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1736991-1745152:-
Coord C1 exon
chrX:1745001-1745152
Coord A exon
chrX:1744177-1744275
Coord C2 exon
chrX:1736991-1737107
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTTATGAATTACTCTCTAGGGG
3' ss Score
6.23
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CACCCCAGACCCGGCCCTCTAAGGCCCCCGCGCTTCCGAGCTCCGCGCAAACTCTGGTTCTTTTTGCACGACCGAGGTGGTTTGCTCTTCCGTTGCCCTGTGGCTTCGGCTTGTCTCCAGAAGGAAGGCGAGGCTTCCGCCCAGCACTGGGG
Seq A exon
GGGGCGGATCAGCGTGCGGAAGGGGCGTGTTGACGGGGTATCCCGAAGTCTGCCTCACAATCTAGAGTTTATTGATAACCTATACAATAATCTGTGAAG
Seq C2 exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCAGGTTCTAACTGCTCCTCTGCACAGTCAGTGCTGTCCGAAGTGTCTTCAGTGCCAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.949
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTTTTTGCACGACCGA
R:
AGGAGCAGTTAGAACCTGGCT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]