DreEX0082633 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20718168-20722394:+
Coord C1 exon
chr23:20718168-20718442
Coord A exon
chr23:20722053-20722169
Coord C2 exon
chr23:20722336-20722394
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTCTTGTTTTCCAGATG
3' ss Score
11.11
5' ss Seq
AACGTATGT
5' ss Score
7.69
Exon sequences
Seq C1 exon
CACAGCTCCGCCCTTGTGCCTCAGCTGCCATTTTGGTTTTGTTCCGTTCGCTGAAACAAAACCAGAAACGCGATACAGCAGGCAGCAGACTGAACGACAGTGACTCGGCAGGATAGTGAAGGGGGCTTTCTCACAGCATCTCGCCCAGCGCTGTTCGTGCTGTTGCTGTTCGTTTTCTCCTCGCATCTTCACCCACCCGCAATCCGCACCATCCAAGTTAGTTTCACACGAGGAGCGGTTTGCTGACACTGAGAGTGGACTGAGAAGGATTATTG
Seq A exon
ATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCGTGTCAGGATCAGAGACGAAGACGGGATCCCATTGCTCCTCCTCTAACTCTGTCAGAACTGAACTGTCACACACACCAGCTAAC
Seq C2 exon
GGCATGGCTAAGAATGGAAATGATGCTGAGATCGACGAGGGCCTGTACTCCAGACAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'5-4,'5-3,11-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAAACGCGATACAGCAG
R:
CCCTCGTCGATCTCAGCATCA
Band lengths:
256-373
Functional annotations
There are 1 annotated functions for this event
PMID: 7673335
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Two dimensional phosphopeptide mapping, alanine scanning, comigration in gel electrophoresis, mutation analysis, protein kinase assay. ELM ID: ELMI003216; ELM sequence: MSSSPLSK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]