BtaEX6006719 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90831727-90836516:+
Coord C1 exon
chrX:90831727-90831754
Coord A exon
chrX:90836211-90836327
Coord C2 exon
chrX:90836458-90836516
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTTATGCTCTCCAGATG
3' ss Score
9.09
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GGCGGCGCGACCCGGGGAACCGGCATTG
Seq A exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGTTCCCCTGCCCACTCCGTATTGTCCGAAGTGCCCTCGGTGCCAGCTAAC
Seq C2 exon
GGAATGGCGAAAAATGTCAGTGACGCAGACATAGATGAAGGCCTTTACTCCCGGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'7-5,'7-4,12-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.923 C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 7673335
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Two dimensional phosphopeptide mapping, alanine scanning, comigration in gel electrophoresis, mutation analysis, protein kinase assay. ELM ID: ELMI003216; ELM sequence: MSSSPLSK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]