BtaINT0155876 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90831727-90836327:+
Coord C1 exon
chrX:90831727-90831754
Coord A exon
chrX:90831755-90836210
Coord C2 exon
chrX:90836211-90836327
Length
4456 bp
Sequences
Splice sites
5' ss Seq
TTGGTAACA
5' ss Score
2.99
3' ss Seq
ATTTCTTTTATGCTCTCCAGATG
3' ss Score
9.09
Exon sequences
Seq C1 exon
GGCGGCGCGACCCGGGGAACCGGCATTG
Seq A exon
GTAACAAACGGCCTTTCTCAGCGCCTTGGCCGGGGCAGGGGTTTCGGGATTGGATGGTGTTGGGCCGGTGCTGGGCCAAGCTAATGTCGGGGCGAGTGGTGATGACTTGGACGGAGGGATCGTTGAAGAGAAGTCGGGGGTCCATTTTGGGCGGGGCCGATATTCCCCATCTGGGACCAGTCCAGTCCCTCGGGCTCCAAAATCTGACCTTAGGCTCAGACCTCCAGAATCTGCTATTAGAGACTCAGCCAGCATTCCTAATCAGGGACCTGGCCCTGTCCTGCATCTTGCATAGCAGATCGGAACTTCCCCCAGTCAGCAATGGAGACTTAAACGGGATCGACATTCCTGGTCAAAGCCTCCTACCAGTGTATGTCATTAAGGACCTACCCCCAGAAGCTTTCTTCATTCACCCTTCGTTCCTCAGAATTTGTCCTCGCAGCTTCCAAGAGGGGCCAAACCTCAGGAAGGGTCCATTTGGTTTCATTTAACCTTCTCTAGCATCTTCCTTCAGAACCATCCTCCACACGCATACGCACACACACACAGTCTGCCCTTAGAGCTTTCAAGGAGTCTAGACCCTGTAAAAGGCTATTTGTGCTTGGCCTCCATGTCAGAGACAACTCCTCCACAAACCAGAGGTCTCCCAACCCACCTTGGCTCTAGCATCTTCCCTCTGAAACCCTTCTGGGCCAGCATTTCTATTCAGAGGTCCACTTCAGCATTCACCTTTAGAGACTGCTTTCATTCCTAGAATCTGTCCTTAAAGACTTCTTTATTTTAAGAGTGTCTCCTTTTGTCTTGTGGTCCAAGTATTCTCTTTAGAGACTATCCTTTGCGGGCCTCAACATCTCCCCCATCAGACACTTCTAAACCCCAGTATCTTACCTCAGAGTTTCCCAGGGGACCAGACACCAGGGAGGCATTGCTTGGACACATAATCCTCCATCAGAGATGTCTCTGCCAGCCTCTGCCCTTGCAGACCCTATTGGCTCCTAGCCCCTTGCATCAGACTTGCCTCTCAAATCCCACCCTTCACTCAACCTCTGCCTTCAAAAGCCAACCAGGGTTCTGGCTTCTCTCACAGATCGCTTAACGTTGAATCAGGCCTCAGAATCTGCCCTCAGAGCCTTCCAGGATCCCAGCATCTTCATTCAGGGTTTCAGCTTCGTTGGACCCCAACATCATGGTCAGTTGTCCCTTCCCACAACAGGTCCAGTTGTTCTCCATCAGAGTAGAAAACCCCTCCTCAGCACTGACTCTTAGAGCCTCCATGGGCTTCCACATAATTGGTCAGAGAAACCCTGCGTATTGAAATCTTTGGGGCCAGAACTGTCTGGGCTCAACCTCCCCTTTCCATTCCTCAGAGCAGTTGCAGTACCTAGCATGTACCAATCAGAGATCAACACGAGGCCTTGTTGCTCTATTAGAAATCCCTCCACAACCCCACGCTCAGCATCCACCCTTGTAGCCTCCTGGATCTCTGACATCAAGGTCACAGACACCTTTTCCCCTGCAAGTCCCTGTTAATTTTGGTCAAAGATTTCCCTCTGCCACCAGTGTAGACCCCCAGGGCCCCAGCATCCTCCTCATGGAGAGCACCCTTGCCCCCAGACCCCATCATCTTCCTGAAACCTCCTGGATGGGAGGATGGGCCCCAGAATCCCCCATCCATTCCCTGTGTAGCCTCTGGGGCCTCCGGTGCAATTTCCCTGCCCTTTCCTGAAAGCTCCTTATCCAAAGACCCTGATTTAAGTCTTAACAACCTTGCCCAGTCACACCCTGGCTGTCCATCACACACCACCCCCACCCCCCCGCCCCGGACTTGTAACATCCCCTTTCCTGTCTCCCTCTGACACTCCAGAGGCTCAGGCAACCGCTTCCTGATGCTTCTGTTTTATATTCCTAGGGATTTCTCATTTAATCCCTCTTAGGAAGCTTGACAGGCCCCAGCATCCTGTGCCCTACCTTCTCCCCGTGCTGATGTCTTAACCCTGTGGCTGCTTGCTCTCAAGCCTGCTCCAGGGCTCCTACCTCACACCGCCTCTGGTTTGGGTGGTAGAGAATGCTCAGGCTTCAAAATCAGCAGTTTGGAGATCTCAGGCAAGCTCTGAAGCTCTCTGAGTCCTGGTTCAGGTTTGCTGAACATTTGGTAGTACGTGTGTCCTAATTGGGGCCATAGCATGTGTTGAGAGAGAAAAGGTATTGATTTTATACTTGGGGTGGAGGATCTTTAGATCTGCTCTGGGGTTTCTGCCCCAGACCCCTTTCTGCTTGCCCTGAGACTGGCCTGTTCCCAATCTCTGCAATTGAAGTCCTCTCTCAGACCATCTGCTGAAACCTGCTTAGACCCTCACTGCCAGCACTAGGGATCCTGATGTCAAAGTCTAGATAGCAGAGATCTCTCTGGCCCTGGACCATTTTTAATTTCAGGTGCAGGGAGATGGTGTGTGTTCAACAACCAAATCAGTGGCAAGGCAAGGAGATAACTAAGTAATAGAGGTCTCTCTGGAGGTATCTGGGGAGGAGCTTAAGTCGCTGAGTTCTGACCACAGACTGACTTTTTTAACCTCCCTAGCAGCCCCTTGAGGGTATTTCCATTTGTCTTTGCTTTGCGGGGGAAAAAAAATGGGGCTCAAAGGAAATGAGCTCCCTACTCTGTCTCAGGAAGTCAGTCATAGAAAATGGAATTTGCCGTGGTCTCCCAGCTAATTCACCAAGCTTCTACCTGGGTTGGTTCTTGGTATTCCCAGCAGTTCAGCTGGGTGCCTTGGACTGTAGCCAGCCTCCTGCCTCCTGGGTACCCCTCCCTCACCTCTCATCTGTCAGCCATGTGGACTGTGCCCCAAGCTGGGTCCTGACTCTGTTCCCCCAGGAGGCATTTGGCAAACAGTCTAGCACCAGCTGCATGACGCTGGGCAAGTGACTGGAGTTTTCTGAGCCCTTGTTTTCTTATTTGTTGCATAGGTATAACGTTATTTGGTTTGTGAGCATTGTTAGAACTAGACAAAGCCCCTTACCCAGAGATTGATGGGCAGTAAGCTCCTAGTAGATGTTAGGGTGCTCTTGTCGTCTTGCTTACTGCTAGCATGTGACAAGTGCCAAAGTGGCCTCAGGTACAGTGGGGGTACTTGGTGTGATTGGGTGTCAGAAAAGGCTCAGTGTAGGAGAACAGAGGCTTAGAGGTGCATTGGTGGTGAGGGGAAATGATTCAGAGTCCTGTCATCTCCAGCCTCTGGGTCCAGTCACCCCCTCGCTCCAAGATCTCACTTTCACAGCAGGCTGCATTATTCTGTCTCTGGGACCTAGTCCTCATGAGCTCAGGTTTTTCCATTTGTCTGGCAAGGACACTCAGCCCTGCCTCGCAGGGTCAGGACCATTGAGTAGATGAAACGCCATAAGGTTAGGAAGCAGCCTGGGCTTCCAGGGTCAGCAGGTCCTAGTATGATTCCAGCTTGGCCACTCTCTTTGTGGGGACCTCAGTCAAGTCTCCAAAGTCCCTGAGTGGATTATTTTCTTCCAGTGTGAGTTGGGGGGCCGTCTTACTGGTAGTAGTCCAAACCCCACAGAGGTGCCCTGAGGACAAAGTGAGGCATAGCTCATTAAGTGCTTAGTTTGATATTTGGCACAAGGAGGACTCCTAATAAATATTCATTTATCATTGTTGACCTGTTTAAAGGACTCCACATAGGGACAAGGCTTGGGAAGTGTGTATTTGCTCTTTCTGTCTGCAGCTTCTTTTATTGGCTCTGGGTGATTTCCCCTCCTGGAGCTGGAGGTGGTGGGGAGGGGGTTGGACTTTGTGAAACTCTTTTCTGTGAACCCCTCTGGGAGCTGAGTTCTCGGCATAATATCTCCTGCCATCGTGCCACCTGGTGGATGTCCAAGCCACGTTTCCCTCTCTAACCCTGGTCGTTGGGATTAAAGGGGAGGAGAATGGCTCCTTGCTGTTGCCTCCCTCCCTGCTCCATGTCAGGCTCTCTGGTCTGTGTTATATCTCATCACTTCAACTCCATGGGGTAGGTAAGTGGTATTCTCACCTGTGTTTTCCAGGCAAGGGAACCAAGCCCTTAAGGGTTAAATGATATCTATTGAGGAGTGGCAAGGTCTGACCTGAAGCTACATCCTTCCTCTGACTCCCCCACAAGTACATTCTTGTCACTCCTTTCCCCCCACAGGATTGGAGTCTCTCCCTCATTATGCTGGGCTGGGGAGAAAAGCGAATGGCCTGGTGGTCAGCAGCATGGATTGCAAGCCAGACCACCTGAGTTCAGATCTTAGCTCTGACAGCTGTGTGACCCTGGGAAAGTCGCCTCACCTCTCTGTACCTGTCTCCTCTTCTGTAAAATGGGGATATTAGCTCTTACATCTTCCCTTTCTGCCCCCCAGTCATCACTAACCAGCAGGAACACCCCCATGCCCCAGGCTCACTTCTGATTTCTTTTATGCTCTCCAG
Seq C2 exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGTTCCCCTGCCCACTCCGTATTGTCCGAAGTGCCCTCGGTGCCAGCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.923
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]