HsaINT0175993 @ hg38
Intron Retention
Gene
ENSG00000130985 | UBA1
Description
ubiquitin like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:HGNC:12469]
Coordinates
chrX:47193842-47198919:+
Coord C1 exon
chrX:47193842-47194024
Coord A exon
chrX:47194025-47198802
Coord C2 exon
chrX:47198803-47198919
Length
4778 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAA
5' ss Score
3.23
3' ss Seq
CTGACCTTTTTTTCCTCCAGATG
3' ss Score
12.39
Exon sequences
Seq C1 exon
GGCTCGGCTGTAAGGAGGTGGCAGGGACAACCACAACCACAACGGCCGGGGGAGGAGAAGGCGGCAGCGGCGATTCTAGGCGGCCCAGGCGGCGGGGAGGAGGAGAAGGAGGAGGGTGGCGGCCGGGCTTGGCTTCGGCTCCTTGAGGAGTTGGCGGCGGCGCGACCCGGGGAACCGGCATTG
Seq A exon
GTAAAAAAACGTCCTTTCACTGCGCCTCGCCCTGGGCAGGGGTTTCGGGGAGGCACTGGAGGGCCCTGAGCCACGCTGCTGTCGGGGCGGGCCGCGGTGACTCGGGAGCCAGGAATCAGCGGAGTAGGGAGGGGGAGCGGATCCTGGGGCGGGGCCGACTTTCCCCGGCCAGGACCACTCCGGCTCCCTCTGGTTGCAAAATCTGACCTTGGAGTCGGACCCCCAGGATGTGCTTTTAGAGACTCACGCCCAACATCTCTAGTCTGGGACCTGACTCCGTCCCGAACCTTGTATCTCAGATCAGAACTCTTCCCCAGTCTCCAATAGAGATTTACGTGGATCAGCATTGCTGATCAGAGCTCCTCACCATTGAATGCCGTTAAAGACCTGCCCCAGAATCTCCTTTGAGACACTTCCTAGCTTCTCAGTATTTGTCCTCAAGGCTTCCAGGACGGGCTAGATCTCGAAGGGGTCCATAGGCCCTTTATCTCTGTAAGAGAGTCCTCTTTAGCATTTTCCTTCAGACCCCCATCCCACACACATGCTAGCCGCGCTCAGAGCTTCCAGGGGTACTAGACCCTGTGAAAGGCCATTTGGGCCTGGCCTTTGTGTCGGGGGCCCCTCTTCGCCACACGTCAGGTCTCCTAACCCCACCCTGGCCCTAGCATCTTCCATCAGAGACTCTGCCCAGTATTTCTACTCAGAGACCCCTCTTACCATCTGCCTTGAGAGACTCTTCAATTCCTAGACTCTGTCCTTTGACACTTTCTCTACTTTTATGGAATTTCTCGCTTTTTATACTTCCAGTATTCAGAGACTACTGAGAGGCCTCAGCATCTTCCCCATCAGGCACCTTGAACCCCCAGAGCCTTCCAGTGCACCAGATACCAGGGAGGAACTGTTTGGATACATAATCCTCCATCAAAGAGCCCCTGCGAGCATCTGCTCTTGCAGATCCCGTTGGCTTCTAGCCCCTTCCATCAGAGACTCGCCTCCCCAACCCCACCCTAGACCCAGCCTCTGCCTTCAAAAACCAACCTGGGTTCTAGCTGCTTTTTTCACAGATCCCTTATCCTCACATCAGGCCTCAGAATCTGCCCTCAGATCGTTTCAAGGTCCCTAACGTCTGCAGTCAGGGGTTTTCAGCTTCTGCTTTCAGCCTCCTTGGACCCCAGGATCATTGTCAGATGTCCCTTCCCCCCACAGGCCTTCTTGTTTTCTTTTTCTTTTTCTTTTTTCCGAGACAGAATTGTTTCACTATGTCGTCCAGGCTGGAGTGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGCCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACCGCGCCTGGCCATGGCCCTCTTGTTTTCTACTGCAGTAGAAAACCCTCTTCTCAGCATCTACCTTCAGCGCCTCCATGGGGTCCTACATAATTGGTCAGAGAAACCCAACCCCATTTGGGGACCTAGCCAGTGTTTGCTTATTAACCTTTTTAAGGCCTGCACTATCTGGGCCCAGCTTCCCGTTTCCACACCCTCAGAGCAGCTGTGATACCTAGCATGTCCTGTCAGAGATTGACACAGGGCCTTTGTGTTCCATTAGAAACCTCTCCCAGCCCCTCACCATCCACCCTCACAGCCTCCTGGGACTCTGTAGTAGGAATGTCAGATACACCTCTCCTCTTGCATGTCCCTATCTATTATTTTTGGTTAAAGATTTCTCTCTGCTACCAGCATCTGTCTCCAGAGTCCTCCAGAGCCTCAACATCCTCCTGATGGAGGCTGCCTCTCCCCCCAGACCCCAACATCTTCCTGCTGCCTCCTCAGACTCTAGAATCCCCCACCCATTCCCTTTGCAGCTTCCATGGGGCCCAGCAACTGTCCTCCTACCTCCTTGCAGCCTTGGGGGCCTCCACTGCAATTTTTCAGCCTTTCTCCAAAAGATCCTTTTCCAGAGATCCGAATTTGAGTCTTTTCCTAATACCCTAGCCTAGTCCTTTCCCTCCCAGGACTTCTAACATCTCCTTTCCCATTTGTCTCAGAGCCTCCTTGCTCTTAGACACCCACTTCCTGATTCTCCTCTCACGTTCCCATGGACTTCTCAGTTAACCCCTCCCAGAAAGCTTGACATGCTCCAGCCCCCCTTCTCTATGCCCTAGCTTCTCCATCCTGCTAACCTGCCTCCTCTCACACCTCCAAGACTCCTCCCTCAAACCCTCTGGTTTGGGAATAGAGAATGCTTACGCTTGAAAATCTTCAGTTTGGAGACTCAGGTATGTTTAGAAACTAAGCCACAGCTCAGCTTTGCCAAACAGTTCACAGTGTGTATGTTATGGTGGGGGCCTGAGCAAATGTTGAGGTAGGAAGGGTGTAGATTGTTTTTCTGCTGGGGGTGGGGGATCTTTAGCTCCTCTGCAGAGTTTCTGTCCCAGACTCCTGCTTGCCTTGAGACAGGGCTGTTCCAAACCTTTGCAGTCAAAATCCACTTGAACAATCATCTGAAACTTCTTAGACTCTTGCTGCCTGCACTGGGGATCCAGAGGTGAAATGTCCAGATATTAAAGTGCTCTCTGGCCCTGGATCATCTCTAATTTATGGAGTGAGGAAATGGCATGTCCCAAACAAACTGACCAATGACAAGGCAAGGAGATAACTAAGTAATAGAGGCCACTACACGTGCCCAGGGAGGAACTCACATCCTCAGGTCAGTGAGTTCTGACCACAGACCTTGGCTTCTTTAACCCTGCCAGCAGCCCCTTGAAGACAGTTTCATTTGTCCCAGCTTTTGGAGAAAATGAGGCTCAGAGGAAATGAGATCTCTACCCCAGGTCAGTCAGAGAGTCAGTAAATGGAAAATATGGTTCACCTTTGTCTCTACTAACTCACCAAGCCTCTTGCTACCCAGGTTGGCTCTTAGCATTCTAAGCAATTCACCTGGCTATCTCAGGGGCTCCAGCCAGCCTGCTGCCTCCCCTCATCTCCCATTCCTTAGCCCTGTGGACTGGGCCCTGAGCCCAGGGGCATTTGGCAAACAGTCCCCCACCAGCTGCATGCCTCTGGGCGAGTGAATGGGGTTCTCTAAGCCTTTCTTTTCCCATTTGTGATTTGGGCATAGGGTTATCTGGGTCATGGGGATTGTTAAGATTAGACAAAGCCCTTTCCTCTTTGATTGACACACAGTATGCTCTTGGTAGATAGTAGGGAGCTCTTGTCATTGTGGTTGGTGCTAGTGACAAGTGCCAAGATGGAATCTTAGGTACATTGGGATACTTAGTGTCATAAAAGTCTCAGTGTGGGAGGACTTGTGTGAACAGAAGACTCAGTGCCTAGAGGAGCACTTGGGGTGAGGGGAAGTGACGCTGGGTCCTCCCATCTCCAGCATGTGGACCCAGTCACCCCCACCACCAGATTTCACTTCCACAGCAGGCTTTATTGTTCTGTCTCTGGGACCTAGCAGGTGACCCTGGGCAAGTTACTTCTCATTTGTCCGGCAAGGACACTAAACTCTGCCTTGCTGGGTCAGGGTCATGGAGGGGATGAAACGTGATAACACGAGGAAGCAGCCTGGGCTTCAGAGTCAGCAGATCCTGGTCTGGTCCCAGCTCAGTGTGTGGGAACCTTGGTCACCGAACGTCCCTGAGTGAATTTTTTTCCATCACTTTAAAGTTGGGGGTATTATTGATAGCAGTCCAAACCCCACAGGAGTACCCTGAGGACAGAGTGAGACGAGGTTTAGAGAAGTGCTTACTATGGCATCTGGCACAAGGAGGACTCCTGATCAATCTAATACTCATTTATCATTGTGGTTAACCTGTTTAAGGGACTCCGCATGCAGATGAGGCTTGGGATGTGTTTGTTTTCTATCTTTTTGCAACCTCTTTTATTGGTCTGTGTCGGTTTTCCCCTCCCAAAGCTGGGGGCAGGGTTGGGCTTTATAAAACTTGAGCCCCTCTGGGGACTGGGTTCTCAGCAAGTTACCGCTCCTGCCATCATGCCACCCTGATGGATGTCCAAGCCTCACTTCCCTCCTGCACTCCCCGCTCCCGCCGCCATCCCTGGGATTAAGGGAGAGGAGAATGGCTGCTTGTTACTGCCTACCTACTCTGTGCCAGGTTCTATGCTCTGTGTTATTTATCATCTCGATAACCCCGTGGGGAAGGTAAGTGGTATTATCACCCCTGTTTCACAGGTGAGAAAACTGAGGCCTGTGGCGGTTAATTATTACTGTTAGTGCGTGGCAGGCTCAAGATTTGAAACCAGGTCTGTCCTGAATCCACATCCTTCCCCTGACCTCGACACAAGTACATTCTTGTCATTCCTTTCACTCCAGGATTGGAGTCTCTCCCTCATTATGCTGGGCTGGGAAGAAGCAAATGGCTTAGTGGTCAGCAGTGTGGATTTGCAAATCAGACCACCTGGGTTCAGATCTTAGGTCTGACAGCTGTGTTACCCTGGGCAAGTCCTCACCTTTCTGTGCCTGTCCCCTCTTTGCTGTAAAATGGGGGTACTAATACTTAAGTCTTCCCTTCCCCCACAGTTGCTACTAACAAACAGAAAAACGGTACCCATGTGCTCCAGGGTCACCTCTGACCTTTTTTTCCTCCAG
Seq C2 exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGCTCCCCTGCCCAGTCCGTGTTGTCCGAAGTGCCCTCGGTGCCAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130985:ENST00000335972:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.985
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains