MmuINT0168765 @ mm9
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20240081-20245691:+
Coord C1 exon
chrX:20240081-20240251
Coord A exon
chrX:20240252-20245574
Coord C2 exon
chrX:20245575-20245691
Length
5323 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATA
5' ss Score
4.19
3' ss Seq
TGGCCTGTCTTTCTCCCCAGATG
3' ss Score
12.79
Exon sequences
Seq C1 exon
AGGAGGGTGGCAGGGAAGACCACAACCACCGCGGTCGGGGAAGGAGAAGGCGACAGTGATCCTAGCTGGCCCAGGCGGCAGGAGGAGGAGGAGAAAGAGGAGGGTGGCGGCCGAGCTTGACTTCGGCTCCTTGAGGAGTTGGCGGCGGCACGACCCGGGGAACCGGCATTG
Seq A exon
GTAATAGCTTTTCTCTGCACCTGGCTCGAAGCGCAAGGGCTCTGGGAGGTATGGGAGGGTCCCTGCTGGCTCTCTGCCAGCCCAATGTCTGAGTGCACTGCCGTGTCCTGGGTATTAAGAGTCACTAGGCAAGCGGGTGTGGGGGTGTGCAAATCCTGGGGTGGGGTGGATCACGTCTGTCTGGGACCACCCCTATTCCCTTGAGCTTCGAAATCTGACCTTGACGTCAGACCCCTATCTCAGCTTCTGGAGACTTCTGGCTCAGCACTATTACCAGGTATCTTGATCCGATCCTGAGCCATGCATTTCCTATCAGAACTCCCCACAGTCTCCATAAAGGCACCGGAATTCGGTGTCGCTGCTCATGAAAGCCGTCCATACTTGTGTGCTATTTGAAGACCTGCCCCAAAATCTCCCTTGAGACTCTTCCTAGCCCTTCAGTATTTGCTCTCATGGCTTAAGAGGGGCCAGGCTTGAGGAAAGGTCCGCGTGGCCTTCATTTCCGAATGAAGAGCCTTGTCTAGCATTTTCATCCAGTCTCCCCTCCCCCCAGGATACTATCTGTCCTTAGAGCTGCCATCTGGATTAAACCCGGTGAAAAGCTCTCTGCCTAGCCTTTCCGTGGGAAATCCATTCCTACATTTGAGATCTCCCAATACCACTTTGACATAGCATCCTCCATCGTGGACACCTGGCATTCTTATTCTTTTAAGCACCTGCCTTTAGAGACTCTCCCTGCTTTTAGGGACGCCCCCCTTTTTCACGTTCTCATTGTTCTTGAAGCATTGTTGTCTTCTCCATCAGCCATCGTAACCCCAGTATATTTCCTTTAGTCTCTCATGGGACTAGACGCCAGGGAGGACCTGTTTGGACACAGTTCTCCATTAGTGATCTCTTGCCGCCATCTACTCTTTCAGACTCTTGATTTGTAGCCCCATCTGCCCGATGGTCTCATTCTAGACCCAATTTTTGCCTTCAAAGGCAGACCAGCATTCTAGCTTCTCTTTTTATAGATTCCTTAATCTAACAACAGGCCTCAGAATCTGCCCTCGTCTTTTTTAAAGGTTTCTAGTACCATCATCATTCAGAGAGTCTCAGCATTTGCTTTTGACTTCCCTGAACCTCTATCACTGTCAGATACCTTTTTCCCCAACAGGCTCATTTATCTTCCACAGGAGTAGAAAACCTCATCTATTTACTGTGGAGTCACAAAATTGACTAGAGGAACCTAATTCCATTTGAAGATCTAGGCAGTATTTGCTTGGTAATATATTATCATGATTACAGAGTTTTACTGTGTGGCTTTGGCTGTCTCAAACTCTTAGAGGCCAGCCTGCCTCTGCCTCACTAGTGCTGGGATCAAAGGTATACACCACCATGCTTAATTTTTAGTAATCCTTTTAAGGCTTAAATTATCTGAAATTCATCTTCCTTTCTCTACCCTGTCAGCAGCTGTGGTACCTGTTTAGATCTACGCAAGACCTTTGTTGCTCCATTAGAAATCCCTCTCCAAGAGTCTGCTCTCAGAGACCTCTCCTTGCCTCTTCGCACTTAATATCACAGCTTCTTGGCACTATAGTGTCAGTATCAAAGACCTTTTTCTGTGCATTCCCATTATTTTTAGTGAAGGGTTTCTATCACTAGAATCGAAGACTGTCAGTCCCAGCATCTCCCTGCAGTAGTTTCAGGGTCTACATTCCCCCACCTCTTTCTAGAGACCCAGATTTAAGTCTGTCTTAATACCTCTGTCCAAGGCCGGGCGAGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAACCAGGGCTACACAGAGGAACCCTGTCTCAAAAAACCAAAAAATAAAAAAAAAAACAATACCTCTGTCCAATACCCCCACCATTTATAAGGCCTGCTAAGGTCTCATTTGGGTGTCTTTTATTATCTCCTTCACAGCTCCTTGAGCTCAGTGACTTCCTCTGATGCCTTTCTCATACTCCTCAAGACTTCTCCTTTAAAACCTCCCAGAAACCTTGGCGAGCCTTAGCATCCTCCTCTGTACAATATCTTTTCTACCTCAATCAGCTGGCTCTGCTTCCTAATCCTACCCCAGGTTCCCCTGCTCAGCCTTTCTCTGCTTTGGGAATAGAGTATTCTCAGGCTTCAGTCATCAGTTTGGAGACCCGGGGTAAGTTTAAAATGCTTTCATTTCAGCTTAGCCAAGTAAGTTTTGGAAAATATATCCTACACTTGATCTTAAGCACTGGGAAATATATTCTAATAGAGAAGGCCGAGCACATGGTGAGGGAGAAAGGATCTCCATTGGCTTTGCTTTTTTGTATTTTGTTTTTATGGATTTATTTTTGGATGGGAGTAAGGGAATCTTTAGTTCTTGTCCTAGAGTCTCTGCCCCACATTCTTCCTGCTTGCCTTGATAAAGGGGCTTTCCAAAACCTGGCAATTGAAATCTCCTGTTTAAATATTTTTTGAAATAGTCTCACTGTACAGTTCAGGCTGACCTCAAACTTAAGAGTCCTCCTGCCTCTGCTTCCTTTTTTTTTTTTTAAGATTTATTTATTTAGGAAGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTTTCGAAAAACAAACAAAAAAAAATTTATTCATTTATTTTATGTATGTGAGTACACTGTAACTGCATAGATGGTAGTGAGCCGCCTTCTTTTTTATTTATTCATTTATCTACTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGAGCATCAGATTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGCAAGAGCAGTCGGTGCTCTTAATCACTGAGCCATCTCACCCCAGTTATGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAGGACTTCTACTTGTGGTCCTGCTTGCTCCGGTCAACTCTGTTCGCTCAGTCCCTGCTTCTCTGGTCCAAAGATTTATTTATTATTATAAATAAGTACACTGTAGCTAACCAGATGCACCAGAAGACGTGTCAGATCTCATTACAGGTAGTTGTGCCACCATGTGGTTGCTGGGATTTGAACTCACTACCTCTAGAAGAGCAGTCAGTGCTCTTAAAGGCTGAGCCATCTTGCCAGCCCCTGCCTCTGCTTCCTAAGTGTTGCGGTTGTGGGCCTGTACTGCCACACCTGGCTTCAAAGTCCACTTTTGAACAGTGACCCCAAACCTGCCAACTTAGACCCTTGCTGCCAGCACTGGGTGAGGGTAGAGAGGTAAAGGTCTGATAAAGAGCTCTCTGGCTCTGGATCTTGTCTGATGTAGGGAGTGGAGAAAGAATATGCCTGGAACAAATGGCAAGGGAAAGGAGATAACTTAAGAAATGGAGGCCCCTGTGAGTGCCTTGGGAGGAGCCTCTGTCCTCATGTCCTTGAGTTTTGACCACAGATAGCCTCTTTAGCCTCATCATGAGGTCAGTTCATTTTCTCCCAGCTTTTGGAGCAAATGAAGAAATAGGATCTCCATGCCAAGTCACTGCCAATAAGTGCAAAATAGGAATTACTTTTGACTCTCTCCTAGGTTATCAATTCTCTTCCTACCCAAGTTGGATCTAAGTATTCCCAGCAACTGCACTGGCAAAATTTGACCCTGGGCAGGCTCCTACTTCCCCTCTTCTCCCTTGCATTATCTCCTATCTCTGAGTAGTCTGGGCTGGACCCAAAGCCAAATTCTGACACTACTCACCTAAGAAAACCATACAAACTAGACAAATGCCATGAGCCAGGAGAAGTGAGAGAAGTTCTCCAAGCTTTCACTTTCTATTTATGGTAAGAGAATGGGCTTATGTAGTTCACAGGGCATTAAGACAAAGCCCTTTACTCTTGTGACAAATGGGGTAGATAGTAGAGAGCTCTTGTCATTGTGTTCATATTAGAATGTGACAGTGCCAAGATGGAATCTTAGGTATGTTGGTGGTCTTAAGGGTCAGAAGAGGCTTCATTGTAAGAGCAGTTGTGTGAACAGAAAACTCAGGGTATATCCAAAGTGCTTTGAAGAGCCACTGGGCCTACAAAGTGATTGTAGGTCCTATCTTTTATTTATTTCTGACTCCACCACCATTAGAGTTCACTTCCAGTAGCAGGCTGTATTGTTATCTTCCCCACCTCTGGGATCTAGTATGTCACTTGATCATATGAGCTCAGGTTTTCTCATTTGTTCAACAGGGATCTTAAGCCCTGCCTTGCAGGGTCAAGACAATTGAGAGCATGAAATTTGCTAACTCTGAGAAGTAGCTTGGACTTCAGTGTCATTGGATCTGGTCTGATCCCAGTTCAACCACTCTGAGTGGGAACTTTGTTCAAATCACCAAACATCCCTGAAGTTTTTCCTTCCATGTGAGCTGGGGTAAATAAGTAGTTCGATTCCCATAGGGCTGCCCTGAGGATAGACAGCGACAAGACTAGTAAAGCGTTTAATGTGGCCTCTGACACAGAACTCCTAGTAAATATTCATTTATCATAACTGCTAACCTGTTGAAGGGCCTTCACATGAAGAGACTTTAGAAGTGTGTATTTTCTCTCTTACGCAGCCTGTTTTATTGGCCCAGGTTGTTTTCTATTCCTAAAACTGGGAGAAAGGTTTGGGCTTTGTAAAGCTCTGCCCTGAGCCCTCCTGGACCTGTGGTCTGTATCTTTTCTCATCACAGCAACCCATAGAGCTATATCACCACCTATTTTTGCAAAGTGAGGGAGCAGCTCTACATGCTACCTATCAGGGACAAGATTGGAAACCTGAGTATTTCCTGAGTACACATCTGTCCTCCAGTCTTCTCAAAATGGTCGTCTTCCTTTTACTCCATAGCATTGGCGCCTTTCCCTTATGCTGGGCTAGGGAAAGACAGGATGACTTAGCAGTCAGCTGTGTGGATATGCAGGCCAAACCACCTTGGTTCAACTCTTGAGTCTGACAATGGTGTGATCCTGGACAGGCCACGTCATCTGTCCGTGCTAGTTTCTTTCCTAATGTAGACTTGCTGATCCTTGATCAAATCTTCTCCCACTATTACTATTAATAAGTAGAAAAGTAGTTTAAGGCTAATCAAGGCTACATGGTGAGACCCTGTATTTAAAAGAAACAAATAAACCAGAAAAATATCACCATGTATCCTAGGCTTACCTCTGGCCTGTCTTTCTCCCCAG
Seq C2 exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGCTCCCCTGCACAGTCTGCGCTGTCCGAAGTGTCCTCAGTGCCAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-Uba1:NM_001136085:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: