MmuALTD0015134-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032307 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr9:55180473-55183186:+
Coord C1 exon
chr9:55180473-55180619
Coord A exon
chr9:55180620-55180623
Coord C2 exon
chr9:55183102-55183186
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TTAATTATTAATTGTTTCAGGGT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GATATAGAAGACTTGGATCACTATGAGATGAAGGAAGAAGAACCTATTAATGGGAAAAAGTCAGAGGATGAAGGGATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAATGTAAGT
Seq A exon
GTGA
Seq C2 exon
GGTGCAGTGTCTGGGTCAGTACAAGCATCAGACAGACTGATGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032307-18-19,19-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.149
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0017921=UQ_con=PU(10.9=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGACTCAAAGGCAAGACCA
R:
GTAGACGTCCCTGAGCTCCTT
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types