Special

MmuALTD0015134-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000032307 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q (putative) 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr9:55028280-55030993:+
Coord C1 exon
chr9:55028280-55028426
Coord A exon
chr9:55028427-55028430
Coord C2 exon
chr9:55030909-55030993
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TTAATTATTAATTGTTTCAGGGT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GATATAGAAGACTTGGATCACTATGAGATGAAGGAAGAAGAACCTATTAATGGGAAAAAGTCAGAGGATGAAGGGATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATCAGGAAGACTCAAAGGCAAGACCATTTAAATGTAAGT
Seq A exon
GTGA
Seq C2 exon
GGTGCAGTGTCTGGGTCAGTACAAGCATCAGACAGACTGATGAAGGAGCTCAGGGACGTCTACAGATCACAGAGCTACAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032307-9-8,10-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
In the CDS, with uncertain impact





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.155
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0017921=UQ_con=PU(10.9=58.6)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000059798





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000112745, ENSMUSP00000113336
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr15:76165920-76165921 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr21:31674768-31674769 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr10:4461365-4461366 
Zebrafish
(danRer10)
chr25:29007073-29007225 
ALTERNATIVE
DreALTD0021569-2/2
(ube2q2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGAAGACTCAAAGGCAAGACCA

				
R: 
GTAGACGTCCCTGAGCTCCTT

				
Band lengths: 
98-102

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"