Special

MmuALTD0015580-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56977957-56980076:+
Coord C1 exon
chr19:56977957-56978012
Coord A exon
chr19:56978013-56978382
Coord C2 exon
chr19:56979969-56980076
Length
370 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGCC
5' ss Score
4.01
3' ss Seq
AACGGGTATCTCTCTGGTAGGCC
3' ss Score
6.26
Exon sequences
Seq C1 exon
CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG
Seq A exon
GTATGGTTTGCCTCTTTGACCCACAAACTCTCTTTGAGACTGATTTATAGAGGGACCCTGAGAGTCCTGAGCAGATGTGGGGTTGGGGTTAATCCCAGGGCAGGAGGGGTGGGTGTTTGGCCAAAGAGTGCTTCTGTTATTCTTTCCCTCCATCTGCTCAATGGTATAACTTTGCTGCGGGTGGACTGGTGGCTTTGGAATTACCCCATTAACCAATGTGCTTTTTGTGGGTGAGAAACACACCGAGGAACAACTTCATGGATGCCTTATGTCTAATGTTAAACCTGGGGAGATGCCTGAGCGTTTTCACCGTGGTCAAGTGGAGTTACATTTGCCTGCGGTCTACAGCTTCTCTCTGCCACTGTGCACG
Seq C2 exon
GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082-11-10,12-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0000822=EGF=WD(100=86.5)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000026068





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000107219
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr10:116042725-116042726 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr26:35037209-35037210 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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