MmuINT0174348 @ mm9
Intron Retention
Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56977957-56980076:+
Coord C1 exon
chr19:56977957-56978012
Coord A exon
chr19:56978013-56979968
Coord C2 exon
chr19:56979969-56980076
Length
1956 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AACGGGTATCTCTCTGGTAGGCC
3' ss Score
6.26
Exon sequences
Seq C1 exon
CTGGAAGAGAGTGTTCCAGACACACCCTGCCAACTGCTACAGAACCATCTGTCCAG
Seq A exon
GTATGGTTTGCCTCTTTGACCCACAAACTCTCTTTGAGACTGATTTATAGAGGGACCCTGAGAGTCCTGAGCAGATGTGGGGTTGGGGTTAATCCCAGGGCAGGAGGGGTGGGTGTTTGGCCAAAGAGTGCTTCTGTTATTCTTTCCCTCCATCTGCTCAATGGTATAACTTTGCTGCGGGTGGACTGGTGGCTTTGGAATTACCCCATTAACCAATGTGCTTTTTGTGGGTGAGAAACACACCGAGGAACAACTTCATGGATGCCTTATGTCTAATGTTAAACCTGGGGAGATGCCTGAGCGTTTTCACCGTGGTCAAGTGGAGTTACATTTGCCTGCGGTCTACAGCTTCTCTCTGCCACTGTGCACGGTAGCCTCATTCATGGGATCCTACTGAGATCCCTTTATTATTCCCAAGCAGGAAGAATTATCAACACTATTAAGCACCATACACCAGGGTCCCCAGGGCGCCCTCATTGCCCTCCCACTGTCCTGCAAGCACAAACCACCCTGTGTGGTGTTTGTCTTTTTCTGGGTTTGCCACCTCCCCCAGTGAGGGAAGGAGCATTTCCAGGCAGGGAGCAAGGGATGCAAGCCTGGGACAGGCAAGCCCCTGGACACATCCTTTCCAAGTACTGAAGCCCCCATTACTGGTCCCTGATATGAAGGAGAAACTAATTCAGAGGCCATGGCTGTTCAGAAAATGAGGACCCTGAGACCTGAGCTTGAGTCCCTGCTCTGCCCTGACCAGTCACCTGGCCTGTCACCTGACCTCAGTGAGACTTCCTGCTTCCTGTCTCCGTTCTTAGGGTGGCTACGAGGGAGGATAGAATGGAACCTTGCTTTGTGGTTAACACAGCCCTCATCCCCATGGCTGATACTTAGTCAAAGGCCTCTGTAGATCCTGTGGCTATAGTTCCTGAGCCCCCCCCCCCCCGAGAATTCCCCATGATGCTCAAGCTGCTAGTATCAGCTGATCAGACTATCTTTAATCACAGTAATGTGGCTAGTAAATGGTAATATGCTGGTGTTTTGAAGAAAAAATGCTTGCCGGTCCTAATGGTGACACTCTGAGCTAGCTATTCTGTAAGCTTGCACAAGTGCAAAAAGATACTTTGTGTTCTTTGTGACTTTGGGAGGAAGACCATGGGGAGGGTGTTAAACTTCATTTTAATAAATGATAAGGAGCAGGGAACTCGAGCAGTTCGTGGCTACAGGGTACCATCGGCCAGACACTTCAGAAGGGCCTTGCTTTGGCGTTTGCTGGCTTTCCTGTGTTTCACACCAGCCTTGAGGAGGCATCACCCACACTATGCAGTGCACATTCAAAAGCAAATGTCTTAGCCTCTCTCCAGAGCGTTTGCTTCATACCAGGTGGTCCCACAGATTCCTTTGTGTCCGCTGATTGTGGGAGAAGTGTGAGGAGGACAGAGCTTGGGAAAATGAATTAAGATGGCCACAGAGGCAGAGGTGGCTACGTTCATCACTGGGCTGCCTGACTGCCCGGCGTAAAAGCTCATGGCTCTCTGTGCCATGAGGCAGGAGCCTTAGGCAACCCCAGGTCGATTTTGAACAAAGAGAGGGGCCCTTCGGCCCACAGCCATGCCCTCGCCTTGTTGCTATGGAGGTCATCATCCTTAGAAAACTCAGGTAAAACACAAGTCAGTCGTTATGGCAACCCTGGGCCCCTCTGGGCCTTCTCAGAAGCCTTGGATAATGATGGCCAGCATCCTGATACCACAGAGGGAGCACAGCAACATGGACCCATTGGACCCAATTGGCACGGGCCCTACCAAGGTCTTCCAGCTGCACGGAGTCCCTCCTCTGAGTATTCGCTGTGAGAGCTTTGCTGCTTTCCCTACCAGATGGTGTGAGCACAACACCGGAGCAACCTTCAGTCTGTACTCTGCCCTCTCTGCCTGTCATCTTGGCTTTTAACGGGTATCTCTCTGGTAG
Seq C2 exon
GCCCCTGTGACTCCCAGCCCTGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082-Vwa2:NM_172840:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: