RnoINT0164008 @ rn6
Intron Retention
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277721526-277723539:+
Coord C1 exon
chr1:277721526-277721581
Coord A exon
chr1:277721582-277723431
Coord C2 exon
chr1:277723432-277723539
Length
1850 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AATGGGTGTCTCTCTGGTAGGCC
3' ss Score
7.33
Exon sequences
Seq C1 exon
CTGGAAGAGAGTGTTCCAGACTCACCCCGCCAATTGCTACAGAACCATCTGTCCAG
Seq A exon
GTATGGTTTGCCTCTCGGACCCACGAAATCTCTCTGAGGCTGGTTTATGACGGGACACTGATAGAACTGAGCAGATGTGGGGTTGGGATGCCACCCCAGGGCAAGAGGGGTGGACGTTGGTCAAGAGTGTGTTCCTGCCGTGCTTTCCCTTCATGTGCTCAATGGTGTAGCTTTGCTTCGGATGGAATAGTGGCTTTGGAATTACCCCGTTAGCCAATGTGCTTTTCATCGGTGGGAAACACACGGAGTAGCAGCAACTTCACCGATGTCTAACGTTAAACTTGGGGAGACACCCTAGCATTTGCCTGAGGTCTACATTCTCTCTCTCCCGCTCTCCACTGTGGAAGGCCTCATGGGTGGGGTCCTACTGAGAACCCTCTAGGTATTACTTCACTATAGAATCCCAGGCAGGATGATATGTCGGCACCATTAAACACCATTCACCAGGGTCCCCAGTACCCACCCCCACTGACCTACAAACAAAAACCACCCCTGTGTGGCATTCGTCATCGTCTTGTGGGTTTGCTACCCACAGTGAGCTAAGGAGCACTTCCAGGCAGGGAGTGAGGACTCCGAGCCTGGGTCAGGCAAGCCCCTTGACACATCCTTTCCAAGTGCCAAAGCCCGCATGTTTACTGGTCCCTGGTATGAAGGAGAAACTGACTCAGAGGCCATGGCTGTTCAGAAAGTATGGCCCCCAAGACCTGAGCTTGAGTCTCTGCTCTCCCCTGGCCAGTCGACTTCTGCTCAGGGAGCTCCCCCTTCCTGTCTCCATGAGGATAAAGTGGGACCTTGCTTTGTGGCCTTGTCCCCATGGCAGATACTCAATAAAGGCCTCTGTGGCTGTACGTCTTGAGCCCCCAAGAGTTCCCCATGATGCTCACTCAATGCGGTTAGTATCTACCACTGATCAGTCTATCCTTCAATCCCAGTGCTGCAACTAATAAATATGCTACTGTTTTGAAGAAGAAACACTTCCCGGTCCCAGTGGTGACACTCTCATCTAGCTGTCCCTTAAGTTTGCACTAACTCACAAAGATCCTTTGCTCCCTGTGACTTTGGGGGTTTAAGCTTCATTTTCATAGTTGCTACTGAGCAGGGAACTCAAGCAATCCGTGGCTACAGGGTGCCATCGCTCAGACACTTTAGAAAGGCGGGGCTTTGGGGTAGGCTGGCTTTCCCGTGCTTCCCGCCAGACTTGAGGAGGCATCGCCCAGAGTATGCACTGCGCATTCAAAAGCAAAGGTCTTGGTGTCTCTCCAGAGCGTTTGCTCCACGCCAGGACGTCTCACGGATTCATCTATTTTGTCTCCCACTGATTGTGGGAGAAGTGTGAGGAGAGTGAAGCTTAGGAAGGTGAATTAAGATGGCCCGCAGAGGCAGAGGTGGCTGTGTTCATCACTGGGCTCTCTGTGCCACGAGGCAGGAGACTTAGGCAACCCTAGGTTGTTCTTGAACAAAGAAAGGGGCCCTTCATCCCACAGCCAAGCAGTCACCTTGTTGCTAAGGATATCGCCATCCTTAGTAAACCCAGGTAAAACACAAGTTAGTTGTTATGGCAACCCTGGGCCCCTCTGGACCTTCTCAGACGCCTTGGATAATGATACCCAGATCCTGGCACCACAGCGGAAGCACAGCAGCGTAGACCTACCCTTGACCCAATTGGCACGGACCTTACCAAGGTCCTCCAACTGCACCGAGCCCCTCTTCTAGGTGTTCTTTCTTAGCTGTGACAGCTTGGCTGCTCTCCTACTAGGTGGTGTGAGCAGAAAGTTGGGGGGCAACCTTCAGTCTGGTACTTTGCACTCCGTGCCTGTCGTCTCGGCTTTTAATGGGTGTCTCTCTGGTAG
Seq C2 exon
GCCCCTGTGACTCCCAGCCATGCCAAAATGGAGGCACGTGCATTCCAGAAGGTGTGGACAGGTACCACTGTCTCTGCCCACTGGCATTCGGAGGGGAAGTCAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581:ENSRNOT00000051834:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]