HsaINT0181160 @ hg19
Intron Retention
Gene
ENSG00000165816 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:24709]
Coordinates
chr10:116042275-116044729:+
Coord C1 exon
chr10:116042275-116042330
Coord A exon
chr10:116042331-116044621
Coord C2 exon
chr10:116044622-116044729
Length
2291 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AATGGGCATCTCTCTGATAGGCC
3' ss Score
7.1
Exon sequences
Seq C1 exon
CTGGAAGAGAGTGTTCCTAACCCACCCTGCCACCTGCTACAGGACCACCTGCCCAG
Seq A exon
GTATGGTCTGTCTCTTGGATTTACAGGTTCTTTCAGGGCCCTGGGCCCAGGCTGCTTTGTAAAGTGGCTTTTACAATCCTGGGACAGAGGGTGGGGTTGTGACTGGCTCCAGGGCAGAGGGATGGGGCACTTGGGGGGCAGAGGAGAGTGTGCTCTTGACTCCCTCAATGGTGTTTGCTCATTAAGAATGGAGTGGCGGCTTTGGGATTACTCCCCTGAACCAGTGTTGTGTGCATTGGTGAGAGGCAGAGAGGCAGGCACCGAGCACCAGCTTTGCAGACATCCTCAAAGCCAGCACCAAACTCAGGGCAAGATATCTGAGTGATTTCCTCCTCTATAAAACATAGTGGTTTGTCCGATGTCTGGAAGCCCATTTCCCTCCTCCATGTGAAAGGGGGTCATCGTATATGAGGTCCTAGTGAAGATTCAGTAGATAATGCCCATGGAAGTAATCCCTCAGCTGTAAAATCCCAAATTAACGTGAGGAATCATCGATGCCATTATGCATCATTCAGCATGGTTCACCAGTGTGCCCTCACTATCCCTCACTTGGGGTGCTAGTGACCCCACTGACCTGGGAGCTTGAAATTGCCCTTCAATGTGTAGGTGTCAGTCCTGGGGTGGATTTGTTACTCCCGATGAGTAGCCTGTCTCCCGGAAGCAATGCCGGCAGTTAGACACACAGGCAGGGCAGCGAGCAGTTAGACACACAGGCAGGCAGGGCAGCGAGCAGTTAGACACACAGGCAGGGTAGCGAGCAGTTAGACACACAGGCAGGGTAGCGAGCAGTTAGACACACAGGCAGGGTAGCGAGCAGTTAGACACACAGGCAGGGTAGCGAGTGTCCCTATTTGGGGTTAGGTGATCCCTTCAGTATGTTCACAAGGTTTACAGTTCCAGCACCACGGCCTCTGAAGCACAGGAGAATCTGAGAGTGGAGCTGTTTCTGCTCAGAAATTAGGGTTTGAGGACTTCCGGTTTGGAAACTAGAGTGAAATGGCTTTCAGTCCCAGCTTTGCCTCTTACCAATGATCTGACCTGGGGCATGTGACTTCTATTCATTGAGCTTCAGCTTCCTCATCTGTCATATAGGGTTTTTATAGTTCCTACCTAAGGTTGTGACAATGAAATGGGACCATGCGTGTATTGTGCTTAGCACAGTCCCTGGCACATAATAGATGCTCAGTTAAAGGCCACTGTCGTCGATCTCAGTGAGCCCCCAGCTATTTCCACAGTCTTCTGGCTGATACAACAGCAGCCCCAGCGAAGTGCCTAGACTTAGCCTCAATCTTTTCTGCCTTTGAAAAGTCTATATTTTAATTACAATGATGTGGCCATCAAGAAAGAGATTAATATTTGTAAGCAAAAAGGACAAGAAAATGCCAGTCCCAGTTGTGACCACACTCAGCTGCTTATCCAGCTCTTGGAATACATGATCACATGAAGACCTTGTTTGTTTTCTGTAACCCTGGGAAGGAGGTCATGTGGTTTTAGCTGCACTTTGTAATAATTGATAAGGAAAGCAATGAGATGCTCAGGCATGGACCACAGGGAATCATAGATCAGACGCTTCAGAATGGGCCACATTTTGACACAGGCTGTGGTTTCCCATGTAAACTTTCAGCTTTGAAGAGGCCTTGCTCATAATTTGCATCTCACATCCAAAAGTCAATACTGTCATTACCTGTTGGGGAGTGTTTTTTTAGTGCTGAGACTTTCTGCGGATTAATTCATTTAATCCTCACAATAACCCCACAGAACAAGTTCAGTTCCCATCACTCCTTTTTAGATGAGGATATGAAGATGGGAGAGGTTAATTAAGGTGCCGGAGGAAGTGGAAGAGGCCACATTCAGTCCTGAGCAGCCTGACTGCAGGATCCGAAGGCTGGTGTGTTTTGCTGTGCCAGGTGCAGAGGCCATTAAGACAACCCTGTGTAGAACTTAGAAGACAGGGCCCCATTGGCACCGCAGCTCTCTCTCAGTCTTGAGGCACCCACACTTGATGCTACGGGGAGCTTCCTCCTTGTCAAGCTTCAGTCTAACACCAGTTCATCACACAGGGCCTTACCAAGCCTGCTACAGAGCATCCTTTACCACCCGTGCCCAGCCCCTCCTTTATGAACTCCACAGTGCTTTCCCCTCTCTGCTGCAGATTTCCTGGTGGACTGTGGGGGAAGGGAGGGGCTGGGCCACTGCTAGAGCAGGAAGCCAGCTGCACCCACACCTCTGGCCAGTCCTCTCCACTCCTCTGTGCTGCGGTGCTTAGCGGTTAATGGGCATCTCTCTGATAG
Seq C2 exon
GCCCCTGTGACTCGCAGCCCTGCCAGAATGGAGGCACATGTGTTCCAGAAGGACTGGACGGCTACCAGTGCCTCTGCCCGCTGGCCTTTGGAGGGGAGGCTAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165816-VWA2:NM_198496:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF073337=SLR1-BP=FE(38.0=100)
A:
NA
C2:
PF073337=SLR1-BP=PD(54.0=73.0),PF0000822=EGF=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)