DreINT0174591 @ danRer10
Intron Retention
Gene
ENSDARG00000075441 | vwa2
Description
von Willebrand factor A domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100302-1]
Coordinates
chr12:30204434-30204680:-
Coord C1 exon
chr12:30204625-30204680
Coord A exon
chr12:30204542-30204624
Coord C2 exon
chr12:30204434-30204541
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GAATGAGCATCTCTCTTCAGACC
3' ss Score
4.43
Exon sequences
Seq C1 exon
GTATAACAAAGTTTACAGGCAACACCCTGCTGTCTGTCACAGAACTATTTGTCCAG
Seq A exon
GTAAGAGCTCACAAATTCAATATTGAATAATGAACATATCATTGCTCATCATCAGATGAATATGAATGAGCATCTCTCTTCAG
Seq C2 exon
ACCCCTGTGACTCTCAGCCCTGTCAGAATGGGGGGACGTGTGTTTCTGAAGGACTGGATAAATACCGGTGCGAGTGTCCTGCTGGTTACGCCAATGACCCCAATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075441:ENSDART00000152985:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGTTTACAGGCAACACCCT
R:
CACAATTGGGGTCATTGGCGT
Band lengths:
159-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]