BtaINT0160607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35036743-35039475:+
Coord C1 exon
chr26:35036743-35036798
Coord A exon
chr26:35036799-35039367
Coord C2 exon
chr26:35039368-35039475
Length
2569 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
AACAGGCATCTCTCTGGTAGGCC
3' ss Score
4.4
Exon sequences
Seq C1 exon
CTGGAAGAGAGTGTTCTTCACCCACCCCACCACCTGCTACAGGACCACCTGCCCAG
Seq A exon
GTACAGTCTGCCTCTTTGATTCTCCTGTTCTTTCTGCCCTGGGACGAGGCTGGCTCCCAAAGGGGCATTTGTACTCCTGGGGCAGTGAGTAGGGTTGGACCCAGCTCCAGGGCAGAGGCACGGGGATTTCAGGGGCAGAGCAACATGCTTGTGTGATACTCAATGTTTCCCTCATTCAGCAGTATCTTTTCACTGAGAATGAAGTGAAGCTTTGGAATTACTTCCTTAACTGGGACTCTGCATTGACATGAGGCTGAGCAGGGCATGCACTGACCCCTGGCTTTGCAAACAGAAAACTTCATATCTAGCACCAAACCCAGGGCAAGATACCTGAGCCTTACTTTCTTTCTCTGTAAAATGAGGGCAATGTTTGCCCCTCGTCTGGACTCCCTGTCTCCCTACTCTGGATGGTAGAGGGTACCACACATGGACCCCTAGGGAAGAGTCAGTAGATGATGTCCACCCAAGTGCTTCATCAGTTACAAAGTCCCCAGCAAACAGGAGGCCTTATCAACCCCATTAGGATCATTCGGCCTGGCTCCCCAGTGGGCCCTCCCTACTCATCACTCTGGGGTCTAGAGCATCTCACGGATGCAGGAGCATGAAAGTTGGTTGTCTTGGCATCAGTGCTTGTGTGGATTTGTTGCTCCTAATGAGGCCAGGTGCCTGGCCCCTGAAGAGCCAGAGGCTTGTGTGCAGGCAGGAGGGTTCTTCCTACCTGGGGTTAGGAGATCTGCTGGGCATCTTATTTTAAAGTTCCAAGGTGGCTGGCCTCTGACAGCTGGCAGGAACTGAAAGCCTGGTTGTTTCCACTCAGAAATAAAAGGTCAAGGACTTGCGGTTTCGAAAGCAGAATAATTTGGGTTTGAGTCCCAGCTCTGCCGCTTTTCAAGTAGCTAACCTTCAGCATGTGACTTCTATTTGTTGAGTTTCAGCTTCCTGTCTGTGACATGAGGCTTCACAGTACTTGCTTCATTTGGTTGTATCAGTGAAATGAGATAATGCATGTGTAACCCTCAGCTCAGTTCAGTTCAGTTCAGTCACTTAGTCATGTCTGACTTGGCAACACCATGGACTGTGGCATGCCAGGCTCCCCTGTCCATCACCAACTCCCGGAGCCTACTCAAACTCAAGTCCATTGCGTCAGTGACGCCATCCAACATCTCATCCTCTGTTGTCCCCTTCTCCTCCCACCTTCAATCTTTCCAGCATCAGGGTCTTTTCCAAGGAGTCAGTTCTTCGCATCAGGTGGCCAAAGTCTTGGAGTTTCAGCTTCAACATCAGTCCTTCCAATGACTATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCTAGGGACTCGCAAGAGTCTTCTCCAACACCACAGTTCAAAAGTATCAATTCTTCAGTGCTCAGCTTTCCTTATGGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCTTGGACTAGATGGACCTTTGTAATATCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAACTTTTCTTCCAAGGAGCAAGCGTCTTTTAATTTCACAGTACCTGACCCATAATAGTCGTTCATTTAAAGGCCACTGTTGGCACTGTTAATGAACCCCCAGTCGTTTCCATGAGACTCCAGCTGATAGGACTGCAGGCCTGGGTGCCCAAGATCAGATCAGATCAGATCAGTCGCTCAGTCGTGTCCTACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCGTCACCAACAGTTACTCTCAATTCCTACCTTTCAAAAGTATACACTTTAATTATAATCATGTGACCACTAAGTAATATATTAACATTTTTAAGGTATTGGGGGTGTCGAATCCTACATATGAATATTCACTGGAAGGACTGAATGAATAAATCTTCATAGTTTTACAGTTTTAAAAATTCATAGTTTTAAAAAATCTTCAACTTCACCACCCCATCTTCACCATCCTTCACCATCTTCAGCTGGAGCTCCAATACTTTGGCCACGTGATACTAAGAGTGGACTCATTGGAAAAGACCCTGATGCTGGAAAAGATTGAAGGCAGGAGGAGAAGGAGGTGACAGAGGATGAGATGGTTGGATGGCATTACTGACTCAACAGACATGAGTTTGAACAAACTCTGGGAGATAGTGAAGGACAGGGAAACCTGGCATGCTGCAGTTCATGGGCTCACAACAGTCAGACAAGACTTAGTGACTGAACAACAACAATATATGAATGGGTGTGTGTGGGGACATAACTCAGTCTATAACATGTGCTCCCAGTATCAGAGCCAGATCGCATTGGCAGATCCGCAGTGAGCCTGTGCTTCACACAGAGCATTAACTGAGCCCACCACTGAGTATCTGTTACTTCCCACACCCTAACCCCTCATTGGCTGTCCTTCCCATCTTTGCTACAGGTGTTGAGACCAATTTCCTGGTGCATCCCAGGAAAGGAAGGGGCTGGGCCCTAGTGGGGCAGGGTGGCCAAAGCCCTTCCATCTCTGGGCAGATGTGCCAGGCTGTTAACAGGCATCTCTCTGGTAG
Seq C2 exon
GCCCCTGTGACTCACAGCCCTGCCAGAATGGAGGCACGTGTGTTCCAGAAGGACCGGACAGGTACCACTGCCTCTGCCCACCAGCCTTTGGAGGGGAAGCCAACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860:ENSBTAT00000009011:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=83.8)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]