MmuALTD0016041-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022811 | Zfp148
Description
zinc finger protein 148 [Source:MGI Symbol;Acc:MGI:1332234]
Coordinates
chr16:33456876-33466978:+
Coord C1 exon
chr16:33456876-33457001
Coord A exon
NA
Coord C2 exon
chr16:33466855-33466978
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTTATTTTTTTTTAAACTAGATC
3' ss Score
7.55
Exon sequences
Seq C1 exon
ATAAGTGTAAAGCAGGAAATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAA
Seq A exon
NA
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGGCATGTCTTCATTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022811-25-14,26-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=NA C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACAACGCTCTCCTGCAA
R:
AGTTCGTTCTAAAGGCAGCAT
Band lengths:
114-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types