RnoALTD0034398-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70540956-70550977:-
Coord C1 exon
chr11:70550852-70550977
Coord A exon
NA
Coord C2 exon
chr11:70540956-70541079
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TGCCTTTATTTTTAAACTAGATC
3' ss Score
6.74
Exon sequences
Seq C1 exon
ATAAGTGTAAAGCAGGAGATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTGAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAA
Seq A exon
NA
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTCTGTGAGCACTGCAACGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789-19-14,20-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=NA C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACAACGCTCTCCTGCAA
R:
AGTTCGTTCTAAAGGCAGCGT
Band lengths:
114-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]