MmuALTD0016052-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50712214-50719659:-
Coord C1 exon
chr11:50719592-50719659
Coord A exon
chr11:50719588-50719591
Coord C2 exon
chr11:50712214-50714793
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATC
5' ss Score
5.91
3' ss Seq
GAATTTGTTTCCTTTTTCAGGCT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GCCTGGCTCGTTGTCTGTGAGCATCCTGTGCTCCCAAGAGGATCTCCTAGACTGGGTTTTAAAACTTT
Seq A exon
GTAG
Seq C2 exon
GCTGCGAGACAAAACTTGAAACAAGAGAGTCAACTCCAAAGTCCACCATTACTGGAATTTTGCCCTATGGGGTCATAATGGACAGGGAAGATCTCTGGCATTCAGCTTTGGGGGCTGTCTGGGATCCTACCTGTTGGTTAAAGGGGCAACAGGAGAGATACCTGGGCCAAGTGACAGTGGCCCAAAAGGAAATCTATAATGAGAAGAGTGTGTGTGGAGGTAATACAACTGAGAACTCTTCCACTGAGGGATCAATGCTTAATACACCACAAAGCATTCCTGTGACACCTTGTAATTGGAATTCATATAGAAAAGATTCTAAACAAAATTCTGAGTTAATGAAAACTTCAAGAATGTTTGTACAAAAGAAAGTATATGGCTGTGATGAGTGTGGGAAAACCTTCAGGCAGAGTTCATCCCTGCTTAAGCATCAGAGGATTCACACTGGGGAGAAACCCTACACATGCAACGTGTGTGACAAGCATTTCATCGAACGCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321-5-9,6-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGCTCCCAAGAGGATC
R:
TGGTGGACTTTGGAGTTGACTC
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: