MmuEX0053083 @ mm9
Exon Skipping
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50712214-50719659:-
Coord C1 exon
chr11:50719592-50719659
Coord A exon
chr11:50719108-50719188
Coord C2 exon
chr11:50712214-50714793
Length
81 bp
Sequences
Splice sites
3' ss Seq
CCTCCTGCTTTTCTTTGTAGTTG
3' ss Score
9.22
5' ss Seq
CAGGCGAGC
5' ss Score
1.85
Exon sequences
Seq C1 exon
GCCTGGCTCGTTGTCTGTGAGCATCCTGTGCTCCCAAGAGGATCTCCTAGACTGGGTTTTAAAACTTT
Seq A exon
TTGGTGATGATGAAAATTAGTGAAGAATAAAGAAAGCAGATGCCCAGGGTCCAGAACCTAGACCAAGAACAAGCATCCCAG
Seq C2 exon
GCTGCGAGACAAAACTTGAAACAAGAGAGTCAACTCCAAAGTCCACCATTACTGGAATTTTGCCCTATGGGGTCATAATGGACAGGGAAGATCTCTGGCATTCAGCTTTGGGGGCTGTCTGGGATCCTACCTGTTGGTTAAAGGGGCAACAGGAGAGATACCTGGGCCAAGTGACAGTGGCCCAAAAGGAAATCTATAATGAGAAGAGTGTGTGTGGAGGTAATACAACTGAGAACTCTTCCACTGAGGGATCAATGCTTAATACACCACAAAGCATTCCTGTGACACCTTGTAATTGGAATTCATATAGAAAAGATTCTAAACAAAATTCTGAGTTAATGAAAACTTCAAGAATGTTTGTACAAAAGAAAGTATATGGCTGTGATGAGTGTGGGAAAACCTTCAGGCAGAGTTCATCCCTGCTTAAGCATCAGAGGATTCACACTGGGGAGAAACCCTACACATGCAACGTGTGTGACAAGCATTTCATCGAACGCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTCCCAAGAGGATCTCC
R:
ACAGGTAGGATCCCAGACAGC
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types