Special

MmuALTD0016068-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000022526 | Zfp251
Description
zinc finger protein 251 [Source:MGI Symbol;Acc:MGI:1918841]
Coordinates
chr15:76682578-76700350:-
Coord C1 exon
chr15:76700237-76700350
Coord A exon
NA
Coord C2 exon
chr15:76682578-76685044
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGTGCTTTTTGTTTAACAGATT
3' ss Score
10.57
Exon sequences
Seq C1 exon
GATTCCCAGGCCCTAAGCCAGAACTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAAGAACCAGAAGTCTTGAGACGTTGCCAGACAG
Seq A exon
NA
Seq C2 exon
ATTCTGAGATCGAGGCCGAGAAGGAGCTATCCATTTTAAACCAGAAATGTTTCGAAGAAGTAAAAACCCCAGAATTCATATCACCGAAATTCCCAAGGGCTTATTCACAGGCGTCTGAGCCCCAGGAAGCTTGTGCCCATGAAGGTCAGGGAGATGGGAGCCACGGAAGCTCTGCTACTCAGGGTTTGAAGAGCATTGCTAAAAAGGACGCTGCGGTCTGTAGGGAGCAGTTTCCCAAGAACGCCCAGACTTCTGTGTTTGACAAACACTTGAATCCCAGCCAAAGTGTTGTTACAGTTCAAAGAAATAAAGCAGGACAGAGAATCTTTAAATGTGACATATGCAATAAAACGTTTAAATATAATTCAGACCTAAGTCGGCACCGCAGGAGTCACACTGGGGAAAAGCCTTATGAATGCGGTCCGTGTGGGCGGGCCTTTACACACAGCTCAAATCTTATTCTTCACCAGCGAATTCACACTGGGAATAAACCATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022526-2-5,3-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.333 A=NA C2=0.172
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=3.9)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000079268





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr8:145979066-145979067 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr14:2282362-2282363 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:28965613-28965614 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGTGGGTCCTGGATCTTCTCG

				
R: 
ACGCCTGTGAATAAGCCCTTG

				
Band lengths: 
174-242

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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