MmuALTD0016068-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022526 | Zfp251
Description
zinc finger protein 251 [Source:MGI Symbol;Acc:MGI:1918841]
Coordinates
chr15:76852148-76869920:-
Coord C1 exon
chr15:76869807-76869920
Coord A exon
NA
Coord C2 exon
chr15:76852148-76854614
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGTGCTTTTTGTTTAACAGATT
3' ss Score
10.57
Exon sequences
Seq C1 exon
GATTCCCAGGCCCTAAGCCAGAACTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAAGAACCAGAAGTCTTGAGACGTTGCCAGACAG
Seq A exon
NA
Seq C2 exon
ATTCTGAGATCGAGGCCGAGAAGGAGCTATCCATTTTAAACCAGAAATGTTTCGAAGAAGTAAAAACCCCAGAATTCATATCACCGAAATTCCCAAGGGCTTATTCACAGGCGTCTGAGCCCCAGGAAGCTTGTGCCCATGAAGGTCAGGGAGATGGGAGCCACGGAAGCTCTGCTACTCAGGGTTTGAAGAGCATTGCTAAAAAGGACGCTGCGGTCTGTAGGGAGCAGTTTCCCAAGAACGCCCAGACTTCTGTGTTTGACAAACACTTGAATCCCAGCCAAAGTGTTGTTACAGTTCAAAGAAATAAAGCAGGACAGAGAATCTTTAAATGTGACATATGCAATAAAACGTTTAAATATAATTCAGACCTAAGTCGGCACCGCAGGAGTCACACTGGGGAAAAGCCTTATGAATGCGGTCCGTGTGGGCGGGCCTTTACACACAGCTCAAATCTTATTCTTCACCAGCGAATTCACACTGGGAATAAACCATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022526-4-11,5-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.172
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGTCCTGGATCTTCTCG
R:
ACGCCTGTGAATAAGCCCTTG
Band lengths:
174-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types