RnoALTD0034426-1/2 @ rn6

Alternative 5'ss

Gene

ENSRNOG00000030308 | Zfp251

Description

zinc finger protein 251 [Source:RGD Symbol;Acc:1311138]

Coordinates

chr7:117909961-117938551:-

Coord C1 exon

chr7:117938438-117938551

Coord A exon

NA

Coord C2 exon

chr7:117909961-117912929

Length

0 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGC

5' ss Score

9.6

3' ss Seq

TTGTGCTTTGTGTTTAACAGATT

3' ss Score

10.37

Exon sequences

Seq C1 exon

GATTCCCAGGCCCTAAGCCAGAGCTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAGGAACCAGAAGTCTTGAGAAGCTGCGGGACAG

Seq A exon

NA

Seq C2 exon

ATTCTGAGATCAAGTCTGAGAAGGAGCGATCCATTTTAAACCAGAAATGTTCCGAAGAAGTAAAAACCCCAGAATTATCACAAAAGTTCCCAAGGGCTAATTCACAGGCATCTGAATCCAAGGAAGCTTGTGCCCATGAAAGTCAGGGAGATGGGAGCCAAGGAAGCTCTGCGACTCAGGGTTTGAAGGGTGTTGCTAAAAAGGACTCCACAGTCTGTAGGGAGCACCTGCCAGAGAACACCCAGGCTTCTTCTGCATTTGACAAACACTTGAATCCCAGCCAAAGTGGTGTTACAATTCAAAGAAATAAAACGGGACAGAGAATCTTTAAATGTGACATATGCAATAAAATGTTTAAATATAACTCAGACCTAAGTCGGCATCGCAGGAGTCACACGGGGGAAAAGCCTTACGAATGCGGTCCGTGTGGGCGGGCTTTTACTCACAGCTCAAATCTTATTCTTCACCAGCGAATTCACACTGGGAATAAACCATTTAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000030308-3-10,4-10-1/2

Average complexity

Alt5

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.385 A=NA C2=0.285

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8)

Main Inclusion Isoform:

ENSRNOP00000028184