MmuALTD0016082-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000049764 | Zfp280b
Description
zinc finger protein 280B [Source:MGI Symbol;Acc:MGI:1927865]
Coordinates
chr10:75495378-75501019:+
Coord C1 exon
chr10:75495378-75495478
Coord A exon
chr10:75495479-75495494
Coord C2 exon
chr10:75500979-75501019
Length
16 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGTGATTTGTTTGTACTCAGGTG
3' ss Score
9.12
Exon sequences
Seq C1 exon
CCGGCCGGGGCTTTGGTGTTGGAGCGGCGGGGCCCTGGAGGTCGTGGTGCGGGGCTTCCCGCGCAGCGCCTCGCGGGCCGGGGCGTCCGGGGGAGGCTCAG
Seq A exon
GTACGCCTGCCGGGAG
Seq C2 exon
GTGGCAGTGTGTGTGCAGTGCCGTGTGGCCACACTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049764-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138361=DUF4195=WD(100=32.9),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCTTTGGTGTTGGAG
R:
CACTGCACACACACTGCCA
Band lengths:
116-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: