MmuEX0053156 @ mm9
Exon Skipping
Gene
ENSMUSG00000049764 | Zfp280b
Description
zinc finger protein 280B [Source:MGI Symbol;Acc:MGI:1927865]
Coordinates
chr10:75495399-75505979:+
Coord C1 exon
chr10:75495399-75495494
Coord A exon
chr10:75495698-75495820
Coord C2 exon
chr10:75500979-75505979
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATGCCATTCCCATCGCCGAGGGC
3' ss Score
-7.44
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGCGGCGGGGCCCTGGAGGTCGTGGTGCGGGGCTTCCCGCGCAGCGCCTCGCGGGCCGGGGCGTCCGGGGGAGGCTCAGGTACGCCTGCCGGGAG
Seq A exon
GGCCCCTCACCTAAAGTCCTGGAGGCTGCAGACCTCGCTACTGGGCTCTCCGACGCCTGCCTCGAAGCTCTGCCACTAGGGAAGGAGGAGGGAGGACCACTTCGTTGAGACCCATTCAAAAAA
Seq C2 exon
GTGGCAGTGTGTGTGCAGTGCCGTGTGGCCACACTCATCAGGAGCCACATCAGAAATGGAGCAGCCATTCACGGTAGATGATGAAGACGAACAAGATCCAGAACCACAGCCGAGGTCAGGAGAACCCATTCAAGTCCTCGATGACGATGCTGCTGAAGATGCAGAGCTGATCTTCGTAGGGGTGGAGAAGGTAAAGGAAGATGCTGAGCTTATCTTTGTTGGGGTGACTTCAGCTTCCCAGCCAGCCAACTCGAACATTTTGAACAGAGTCACCCCAGGTTCACGGTTAAAAAGAAAGCATGACCGACTTAGAGCAACCACGACTCAGAGGTTGCAGCCCTCACGTCCTGCCGCCCCCACATCAGAGGCCGTGGTTGTCTTGCCAGCATCTCCAGCTGAATCAAGGTCGACGGATAGTCCTATTGCTATTGAGCCTTTGTCCGAGTCTGATTATAGAAGTAGTTCACCACAGGTTGTGCCTAGTAGCTCTTCCAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049764_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.962 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138361=DUF4195=WD(100=32.9),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAGGTCGTGGTGC
R:
TCTGCATCTTCAGCAGCATCG
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: