Special

MmuALTD0016093-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000057894 | Zfp329
Description
zinc finger protein 329 [Source:MGI Symbol;Acc:MGI:1921283]
Coordinates
chr7:13393261-13397015:-
Coord C1 exon
chr7:13396218-13397015
Coord A exon
chr7:13396155-13396217
Coord C2 exon
chr7:13393261-13393322
Length
63 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCTTGATACTGCATTTCAGATT
3' ss Score
7.11
Exon sequences
Seq C1 exon
AGATATTAAAACTTTTGATTGTGACCAAACCTTACATAGTTGCCCTCCAAGTTATGCAGTTAAGGGAACTGCTGACGGCGATGCTTGTGAGAAAGCCACCCAACCTTCCATGGAAGCCACTCAACTTGTAAGAAACCAAATGAGAGAGAAATCCTATAAATACACAGAAAGTGTTAAATCCTTAAACCACTTTACCACTGCCCTTTGTGATAAAAAAATTAAGAAAAGAAGCAAGAGATTTTATAAAGGTAAGGACTTTGGGGACATCTTAGCCCTGAGCTCATCTCTTAATGAAAAAAGAAGTCATTCTGCTGAGAAACCGTATAAATGTGCCGAATGTGGCAAGTGCTTCAAACGGAACTCCTCTCTGGTTTTACACCATCGGACTCACACTGGAGAGAAACCGTATACCTGTAATGATTGCGGAAAATCATTCTCCAAGAACTACAACTTGATTGTACATCGAAGGATTCATACAGGAGAGAAACCCTATAAATGCA
Seq A exon
GTAAGTGTGGGAAAGCTTTCAGTGATGGGTCAGCACTGACACAACACCAGAGGATTCACACAG
Seq C2 exon
ATTCTGGAACAAGAAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057894-6-3,7-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.250 A=NA C2=0.619
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.8),PF0013017=C1_1=WD(100=19.3),PF134651=zf-H2C2_2=WD(100=9.8)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000104186





     
                   









    
Main Skipping Isoform:
ENSMUSP00000129106





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000113355
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:58640022-58640023 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:65701044-65701045 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:28984755-28984756 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACTCACACTGGAGAGAAACCGT

				
R: 
GGTGCTTCCCTCAGGTTTCTT

				
Band lengths: 
146-209

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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