MmuEX0053232 @ mm9
Exon Skipping
Gene
ENSMUSG00000057894 | Zfp329
Description
zinc finger protein 329 [Source:MGI Symbol;Acc:MGI:1921283]
Coordinates
chr7:13390326-13395142:-
Coord C1 exon
chr7:13395042-13395142
Coord A exon
chr7:13393261-13393322
Coord C2 exon
chr7:13390326-13391941
Length
62 bp
Sequences
Splice sites
3' ss Seq
TTCTTGATACTGCATTTCAGATT
3' ss Score
7.11
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
AATAAAGCACCGTCAGCGAGGAAGGCATTTTCCTAGAGACACTCATTTACCTTTACATCAGGATACTGAAACTGGAAAGAACCTGTGAAGTCATTCAGTAG
Seq A exon
ATTCTGGAACAAGAAACCTGAGGGAAGCACCGCAAGGAAGAGGTGTCAACTCTGAAATTGTA
Seq C2 exon
CAACTGTATGGAGTACGTGCAGTAAGAGTTGGTACTGTAGCAGAAGGCAGAACAAGGTGTTTGCAGTTCAGCAGGGGAGAAGAATAATTGCACAGCATGTATCAGATGGTGGTTGATGCCTGAGAGAAAAGTAAAGCTGAGAAAGGGGATGGGGTGTCTATGTTGGATAAATATGATTACAGTTTTAAAAAGCTTGATCATTCATTTCCTTTCCCAATGAAAGGCAATTACATGTGTGATATGTAAGGGGTATGATGTCATGCAACAAGAGGTTAGGATTTAGGGATGAGAAACCTTCCACCATGTGAGTTACAGGGAGGAACAAGTCAGAGATGGAACGTCTTCATGAGTCACACACAGTTAAAGAAATGGCTTCATTGCAGAGACAGGTATGGAGAACAAAGCTTTGTGCAAGGGTAAACCCATTTACAGGAAAACATCTAATCTATGATTCTGAAGATAATGGTTTCAGAATATGAACAATGAAGTCCTAGCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057894-'9-4,'9-3,10-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.619 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGAGGAAGGCATTTTCC
R:
CACCTTGTTCTGCCTTCTGCT
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: