MmuALTD0016134-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122856699-122857127:-
Coord C1 exon
chr9:122857103-122857127
Coord A exon
NA
Coord C2 exon
chr9:122856699-122856825
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ATAGTTCTTTACTTTTTCAGGAA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTTAGAAGAGGGCATAGAATACCAG
Seq A exon
NA
Seq C2 exon
GAAGCTTTGACTTTCCAGGATGTGGAGGTGACCTTCTCTCAGGAAGAGTGGGGATGTTTGAACTCAGCTCAGCGCAATCTTTATCGGGATGTTATCCTGGAGAATTATGGGAATGTAGTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036-14-14,15-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGAAGAGGGCATAGAATACCA
R:
TCCCGATAAAGATTGCGCTGA
Band lengths:
114-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types