MmuINT1035605 @ mm10
Intron Retention
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122856699-122857161:-
Coord C1 exon
chr9:122857103-122857161
Coord A exon
chr9:122856826-122857102
Coord C2 exon
chr9:122856699-122856825
Length
277 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ATAGTTCTTTACTTTTTCAGGAA
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATTCTCCTGCTGTCTCGGTGCCTGACTATTTCCAGTTAGAAGAGGGCATAGAATACCAG
Seq A exon
GTAACAGCCAGCAAGCCTTTGGTAATCAAGCTGCAGGTGAGCCTCAAGACTTTGGGTCTTTTCTGGTGTCACATGCATGGCTGCCCGATGGGTAGTGCAACTCTCTTCATCCTGGGTTGTCATTTAACTTTATAGTCAAGAGCCCAGAGCTTTCTACTGGGTGATGGCCTTTCACCTTTGCCAGATTTCTCCAGTGTTAACACTGTGTCAGGCCCATGACCCTCTCACAGCTGAGAGCTGTGAGTCAGCTCTAAGTCATAGTTCTTTACTTTTTCAG
Seq C2 exon
GAAGCTTTGACTTTCCAGGATGTGGAGGTGACCTTCTCTCAGGAAGAGTGGGGATGTTTGAACTCAGCTCAGCGCAATCTTTATCGGGATGTTATCCTGGAGAATTATGGGAATGTAGTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036:ENSMUST00000216063:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCTGCTGTCTCGGTGC
R:
AAACTACATTCCCATAATTCTCCAGG
Band lengths:
180-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types