HsaINT0187281 @ hg38
Intron Retention
Gene
ENSG00000185219 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:HGNC:21018]
Coordinates
chr3:44450447-44450962:-
Coord C1 exon
chr3:44450868-44450962
Coord A exon
chr3:44450574-44450867
Coord C2 exon
chr3:44450447-44450573
Length
294 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGGGCACAGTGTTTTTTCAGGAG
3' ss Score
1.85
Exon sequences
Seq C1 exon
ATACTCCTGCTGCCCAGATGCCTGCCCTTTTCCCGAGAGAGGGGTGCCCGGGAGACCAGGTAACACCAACCAGGTCCCTGACAGCCCAGCTCCAG
Seq A exon
GTGAGCCACAGAACATTTGGTCCTTCCTGATGTCCCCACGTCGCTGCCTAATGGGATAGTGCAGCTTCCCCATCCTGGGTTTCTCTGTCTAGTAATCTCACATCCAAAGACCCGTGTTCCAGAGACCAGATTATCCCCCTCAAGCCCAGAGGTCTTCTGCTGGGTGATGGTCTTCCCTTTCACCTTTGCCAGGTCCATCCTGCACTCACACAGAGCCAGTTTATTCCCCTTCTCTCCCTTTCCACCTCAAAGCTGGGAGCTGTGGACCAGCTCTAGGGCACAGTGTTTTTTCAG
Seq C2 exon
GAGACCATGACTTTCAAGGATGTGGAGGTGACCTTCTCCCAGGACGAGTGGGGGTGGCTGGACTCTGCTCAGAGGAACCTGTACAGGGATGTGATGCTGGAGAATTATAGGAACATGGCTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185219:ENST00000396077:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTCCTGCTGCCCAGATGC
R:
CCAGGGAAGCCATGTTCCTAT
Band lengths:
222-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains