MmuINT0179260 @ mm9
Intron Retention
Gene
ENSMUSG00000047036 | Zfp445
Description
zinc finger protein 445 [Source:MGI Symbol;Acc:MGI:2143340]
Coordinates
chr9:122765817-122766279:-
Coord C1 exon
chr9:122766221-122766279
Coord A exon
chr9:122765944-122766220
Coord C2 exon
chr9:122765817-122765943
Length
277 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ATAGTTCTTTACTTTTTCAGGAA
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATTCTCCTGCTGTCTCGGTGCCTGACTATTTCCAGTTAGAAGAGGGCATAGAATACCAG
Seq A exon
GTAACAGCCAGCAAGCCTTTGGTAATCAAGCTGCAGGTGAGCCTCAAGACTTTGGGTCTTTTCTGGTGTCACATGCATGGCTGCCCGATGGGTAGTGCAACTCTCTTCATCCTGGGTTGTCATTTAACTTTATAGTCAAGAGCCCAGAGCTTTCTACTGGGTGATGGCCTTTCACCTTTGCCAGATTTCTCCAGTGTTAACACTGTGTCAGGCCCATGACCCTCTCACAGCTGAGAGCTGTGAGTCAGCTCTAAGTCATAGTTCTTTACTTTTTCAG
Seq C2 exon
GAAGCTTTGACTTTCCAGGATGTGGAGGTGACCTTCTCTCAGGAAGAGTGGGGATGTTTGAACTCAGCTCAGCGCAATCTTTATCGGGATGTTATCCTGGAGAATTATGGGAATGTAGTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047036-Zfp445:NM_173364:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCTGCTGTCTCGGTGC
R:
AAACTACATTCCCATAATTCTCCAGG
Band lengths:
180-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: