BtaINT0165505 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046301 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:HGNC:21018]
Coordinates
chr22:16372906-16373383:-
Coord C1 exon
chr22:16373325-16373383
Coord A exon
chr22:16373033-16373324
Coord C2 exon
chr22:16372906-16373032
Length
292 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TCGGACTGTGTTTTTTCCAGGGG
3' ss Score
9.06
Exon sequences
Seq C1 exon
ATCCTCCTGCTGCACAGGTGCCTGCCCTTTGCTCGAAGGAGGGATGCGCAGACAACCAG
Seq A exon
GTGACAGCCCAGCCTCAGGTGAGCCACAGGACCTTTGAGCCTTCCTGCTGTCCCACTGTTGCTGCCTAATGGGGTAGCTGCAGCTCTCCCTTGTCCTGGGTCTTTCTGTCCAGTGACCTCACATCCCAGAGACCAGATTCTCCCCCTGGAGCCCAGAGCTCTTGTGCTGGGTGATTACCTTCCCTTTCACCTTGACCAGATCCATCCTGTACTCAGAGCCAGCCCCACTTCCCCACTCTAAAAGCTGGGAGCTGTGGAGTGGTTCTCAGGCATCGGACTGTGTTTTTTCCAG
Seq C2 exon
GGGACTATGACTTTCAAGGATGTGGAGGTGACCTTCTCCCAGGATGAGTGGGGATTGCTGGACGCTTCTCAGAGGAACCTGTACAGGGATGTGATGCTAGAGAATTATGGAAACATGGCTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046301:ENSBTAT00000065626:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGCCTGCCCTTTGC
R:
CCACAGAAGCCATGTTTCCAT
Band lengths:
172-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]