RnoINT0168229 @ rn6
Intron Retention
Gene
ENSRNOG00000025554 | Zfp445
Description
zinc finger protein 445 [Source:RGD Symbol;Acc:1559144]
Coordinates
chr8:131892077-131892538:-
Coord C1 exon
chr8:131892480-131892538
Coord A exon
chr8:131892204-131892479
Coord C2 exon
chr8:131892077-131892203
Length
276 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CAATTTTTTTTTTTTTTCAGGAA
3' ss Score
10.9
Exon sequences
Seq C1 exon
ATTCTCCTGCTGTCTCGATGCCTGACTATTTCCAGATAGAAGAGAGCATAGAACACCAG
Seq A exon
GTAACAAGCCGTTGGTAATTAAGCTGCAGGTGAGCCCTAGGGCTCTGGGTCTTTTCTGGTGTCACGTGCATGGCTGTTCTATGGGTGGTGCAGCTCTCTTCTCTTCATTCTGGGTTGCCATATAACTTCATAGTCAGAGTCCAGAGCTTTCTGCTGCCTTTTACCTTTGCCAAATTTATCCAGTGTTAACTCTATGTCAGGCCCATGACCTTCTTGGTAGCTAAGAGCTGCGAATCAGCTCTAAATCATAGTTCTTCAATTTTTTTTTTTTTTCAG
Seq C2 exon
GAAACTTTGACTTTCCAGGATGTGGAGGTGACCTTCTCTCAAGAAGAATGGGGATGTTTGAACTCAGCTCAGCGCAATCTTTATAGGGATGTTATCCTGGAGAATTATGGGAATGTAGTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025554:ENSRNOT00000034690:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCTGCTGTCTCGATGC
R:
AAACTACATTCCCATAATTCTCCAGG
Band lengths:
180-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]