MmuALTD0016152-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000043059 | Zfp513
Description
zinc finger protein 513 [Source:MGI Symbol;Acc:MGI:2141255]
Coordinates
chr5:31503956-31504757:-
Coord C1 exon
chr5:31504657-31504757
Coord A exon
chr5:31504649-31504656
Coord C2 exon
chr5:31503956-31504111
Length
8 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCA
5' ss Score
6.43
3' ss Seq
AAGCACCCTCCCCTCTTTAGTGG
3' ss Score
4.99
Exon sequences
Seq C1 exon
GCATCACAATCACTTCCTGGTCATGCTGCGACTGCGCTCCGGTTGTACAGCCCATGAACTACGCATCCCGTGTTGCTCTGCGGTGGCGGAAGCGGAAGCGG
Seq A exon
GTACGGAG
Seq C2 exon
TGGATACTGAAGATTCCTTCGACGAAGGTCCTGGGGCCCTGGTGTTGGAGAGCGATTTGCTACTAGGCCAAGATCTGGAGTTTGAAGAGGAAGAGGAAGAGGATGAAGGTGACGGCCACAACGACCAGCTCATGGGCTTTGAGAGAGACTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043059-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGAACTACGCATCCCG
R:
AATCGCTCTCCAACACCAGGG
Band lengths:
108-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: