MmuALTD0016192-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000046311 | Zfp62
Description
zinc finger protein 62 [Source:MGI Symbol;Acc:MGI:99662]
Coordinates
chr11:49203996-49212776:+
Coord C1 exon
chr11:49203996-49204168
Coord A exon
NA
Coord C2 exon
chr11:49212695-49212776
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
CATTTTTTTTTTCTTCTAAGGAA
3' ss Score
8.79
Exon sequences
Seq C1 exon
GAGAAACTCATCTGTAGAGCAGTGGGTGCAACCGGAGGCCGCCATCTGCCCTACCCCACCCCCACCCCACCGCAAACTGAGAAAGTGTTGGCCTAGGGAAAAGCCAGCGAAGGCACTTGAACCCAAGTGATCGCTTGGGGAAGTCCTGGGGCAGCGGTGTGAAAGAAAGAAAG
Seq A exon
NA
Seq C2 exon
GAAGTTGAAATGGAAGGTCTAAAATTGAAAAGTAAATGGATGGAAAATCTGATATATGTGGACATGGCAGAGTATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046311-1-7,2-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACCCAAGTGATCGCTTG
R:
TCTATACTCTGCCATGTCCACA
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types