MmuALTD0016192-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000046311 | Zfp62
Description
zinc finger protein 62 [Source:MGI Symbol;Acc:MGI:99662]
Coordinates
chr11:49203996-49212776:+
Coord C1 exon
chr11:49203996-49204168
Coord A exon
chr11:49204169-49204210
Coord C2 exon
chr11:49212695-49212776
Length
42 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
3' ss Seq
CATTTTTTTTTTCTTCTAAGGAA
3' ss Score
8.79
Exon sequences
Seq C1 exon
GAGAAACTCATCTGTAGAGCAGTGGGTGCAACCGGAGGCCGCCATCTGCCCTACCCCACCCCCACCCCACCGCAAACTGAGAAAGTGTTGGCCTAGGGAAAAGCCAGCGAAGGCACTTGAACCCAAGTGATCGCTTGGGGAAGTCCTGGGGCAGCGGTGTGAAAGAAAGAAAG
Seq A exon
GTCAGGTGGAGAGAGCCGCGGCTAGTGTGTTATCTTAAGATG
Seq C2 exon
GAAGTTGAAATGGAAGGTCTAAAATTGAAAAGTAAATGGATGGAAAATCTGATATATGTGGACATGGCAGAGTATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046311-1-7,2-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACCCAAGTGATCGCTTG
R:
TCTATACTCTGCCATGTCCACA
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types