MmuALTD0016223-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000071281 | Zfp65
Description
zinc finger protein 65 [Source:MGI Symbol;Acc:MGI:107769]
Coordinates
chr13:67710881-67724272:-
Coord C1 exon
chr13:67724218-67724272
Coord A exon
chr13:67724188-67724217
Coord C2 exon
chr13:67710881-67711007
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
TTTCTCTCTCTTTTTCTCAGGAA
3' ss Score
11.51
Exon sequences
Seq C1 exon
CTCAAATGTATGCAGTTGTCCTACTCAAAGCTGCATCTAGATTTCTGAGATGGAG
Seq A exon
GTTAGTGCAGGGAGCAGCGCCACTTTTCAG
Seq C2 exon
GAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGAAGAGGAGTGGGAATGCCTAGGTCCTGCTCAGTGGAATTTGTACAGGGATGTGATGCTGGAGAATTACAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071281-1-8,2-8,3-8-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGTCCTACTCAAAGCTGCA
R:
ACTGAGCAGGACCTAGGCATT
Band lengths:
116-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types