MmuEX1028592 @ mm10
Exon Skipping
Gene
ENSMUSG00000071281 | Zfp65
Description
zinc finger protein 65 [Source:MGI Symbol;Acc:MGI:107769]
Coordinates
chr13:67710881-67729119:-
Coord C1 exon
chr13:67729061-67729119
Coord A exon
chr13:67721447-67721545
Coord C2 exon
chr13:67710881-67711007
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCTGACTTTACCTGAAAGTTT
3' ss Score
4.65
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AAACCTTGCTTCTCCCCAAAGTTAATCGAGTGTCTTGGGTTTGGATCCCTGACATGGAG
Seq A exon
TTTTCAGAACATCTGACTCTGCCAATGGAAAATGACAACTGCATCTACTACTGTCTGTCACATGTGGTATCTCCGCCATCCAGGCAGTAATCTGTCAAG
Seq C2 exon
GAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGAAGAGGAGTGGGAATGCCTAGGTCCTGCTCAGTGGAATTTGTACAGGGATGTGATGCTGGAGAATTACAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071281_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGCTTCTCCCCAAAGTT
R:
CAGGAACACAAGGTGGCTGTA
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types