MmuALTD0016248-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000066829 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr9:22276748-22280559:-
Coord C1 exon
chr9:22280453-22280559
Coord A exon
NA
Coord C2 exon
chr9:22276748-22279280
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
ACAAATTCTTTTATCTTAAGGCA
3' ss Score
5.26
Exon sequences
Seq C1 exon
GTGTCAACAAAGTGAGTAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATTTCTGGCAAATTGAAATCAACAGCCATACAGCAAATGAAGAACTGGTTGAA
Seq A exon
NA
Seq C2 exon
GCAGAACTGAAGATTCATGAGGAAATCCACCGAGGGGCCAAATCCTATGAATGTGAAGTGTGTTTGGAAGCATTTTACCTGAAGCCACAGTATAGCACAAAGCAGAGCTATCACACATGCGAGAATCCATGTGACTGTAAGAAGTGTAGAGAAGCTTTCTATCCTAAGTCTACCCTCAGTCAGTATCAGAGGCTTGAGAGAGGTGAGAAACCCCATGCGTGCTTAGAGTGTGGGAAATCCTTCTACTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACCGGTGAGAAGCCTTATGACTGTAAAGAGTGCAGGAAGGCTTTCTACAGCAAATCCCAGCTCAATGTGCATCTGAGAATTCACACCGGTGAGAAGCCTTATGAATGTAAAGACTGCAGGAAGGCTTTCTACCGCAATTCTGACCTCACTGTACATCAGAGAACTCATACAGGTGAGAAGCCCTATGAATGTAAAGTCTGCAGGAAAGCTTTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066829-19-24,20-24,21-24-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCAAATTGAAATCAACAGCC
R:
TCATAGGATTTGGCCCCTCGG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types