MmuINT0179918 @ mm10
Intron Retention
Gene
ENSMUSG00000066829 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr9:22276748-22280559:-
Coord C1 exon
chr9:22280453-22280559
Coord A exon
chr9:22279281-22280452
Coord C2 exon
chr9:22276748-22279280
Length
1172 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
ACAAATTCTTTTATCTTAAGGCA
3' ss Score
5.26
Exon sequences
Seq C1 exon
GTGTCAACAAAGTGAGTAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATTTCTGGCAAATTGAAATCAACAGCCATACAGCAAATGAAGAACTGGTTGAA
Seq A exon
GTAGGTAAAATTGATGTGAGCATTAACTATGGCTATATGTAGGGGGTCTTGATTGGGTTCATTTTCTCTTCCAGTGAAGGAGACCTTATGGGTATAACAATTATCATCAAAGGGAATATCAGACTGAGCAGTCAAGTCAACCAGTGAAGAAAGGTTATCATAGGGGTGAGGAAACACACACAACGAGGCATCTGGGGAAATAACTCTGCAGAGCTGAGGGGGCCCTCAGGAGCCTGAATGAGCTTCTCGTTGAGGGCTTGGGGGTTTCCAGGGTGTTTGAGGGCTCTCTCTCTCTCTCCTCTAATTTAGGGTTGATCAGTCTGAACAAAGAAAGAATGGCTAATAGAGCCAATGATTTGGTATGAACATGTACTGATCCATCCTTGAACTTGTTGGAGATCCATCAGCAAGGTGCCCTACTGGCGGGAAAAGAAGCCCACCAGGCCTTTCTTTTAAGCTTTTATCTCAGATCAAGGGAGTGAGGAAGAAGCTGCTATCTTGGAACTTCAGTATCTTTATTATCTAGTTCCAGCCCCTCTCCCAACTGTCCATCATCCAGATATTTGTCTAACTCCAGGTCTCTCAAAATTGTCTTTCATAGTTGAATATAAAGAGTGTAAACTATTTTAGGAATGTTTTCTCAGAAACTTAGTCTATGGCAAGATGAACTTCTCATTGGTGAACCTTACCAGATGTAGGCTAGAGAGGAATTGTTCATTTTAAAGTAATTGAAACCCTTCAGTTACCTGAGTCTCTGAGTATCCTTAACAGCAGCTAATTGTGTCTTTCTAAATATTCAGAATCAAGGAAAACCTACAAAGGAGGGCTATTGGCACAGAAGTTGTCATTTGTAGGGGAGCTGCAATGAGCTCAGTGAATATGGGGGATTCTTTGATGGGGCATCAAGTGAATATGGGGGATCCTTTGATGACGCATTAGTTCTTCAAGTCAAGGTGCAGATCAGGAAGCAGAGTTCCTAATACAATGTATGTGAGATAACATTCTTTCACTAAATTCAGTTAATGAAGTTGTATTTAACAGTGGAGAGAAATACTTCAATGTAGTCATTGTGAGAAATCTCATTAGGAAATCATGACAAGAAAAGCTCAGATAGTAAATTCTATGGGACATTCCCTGTGAAGATGAAGACTAACAAATTCTTTTATCTTAAG
Seq C2 exon
GCAGAACTGAAGATTCATGAGGAAATCCACCGAGGGGCCAAATCCTATGAATGTGAAGTGTGTTTGGAAGCATTTTACCTGAAGCCACAGTATAGCACAAAGCAGAGCTATCACACATGCGAGAATCCATGTGACTGTAAGAAGTGTAGAGAAGCTTTCTATCCTAAGTCTACCCTCAGTCAGTATCAGAGGCTTGAGAGAGGTGAGAAACCCCATGCGTGCTTAGAGTGTGGGAAATCCTTCTACTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACCGGTGAGAAGCCTTATGACTGTAAAGAGTGCAGGAAGGCTTTCTACAGCAAATCCCAGCTCAATGTGCATCTGAGAATTCACACCGGTGAGAAGCCTTATGAATGTAAAGACTGCAGGAAGGCTTTCTACCGCAATTCTGACCTCACTGTACATCAGAGAACTCATACAGGTGAGAAGCCCTATGAATGTAAAGTCTGCAGGAAAGCTTTCTACTGCAATTCACAGCTCACTGTACATCACAGGACTCATACAGGTGAGAAGCCTTATGAGTGTCAAGTATGCAATAAAGCTTTCTACTGCAAGTCACAACTCGCTGTACATCACAGGACTCATACGGGCGAGAAGCCTTATCAATGTAAAGAATGCAGGAAGGCATTCCAGTGTAGGTCAGACCTCACTCGACATCAGAGAACTCATACTGGTGAGAGGCCATATGAATGTCCCGAGTGCAGGAAAGCTTTCTACCGCAAGTCAGACCTCACAGTACATCAGAGAACACATACAGGGGAGAAGCCCTACGAATGTAAAGAGTGCAGGAAAGCTTTCTACTGTAATTCACAACTTACTGTACATCAAAGACAACACACAGGCGAGAAGCCTTATGAATGTAAAGACTGCGGGAAAGCTTTTCAGTGCAAATACGAACTCACTCGACATCAGAGAACACACACAGGCGAGAAGCCTTATGGATGTAGAGAGTGCAAGAAAGCTTTTTACACCAAGTCAGATCTCACTCGGCATCTAAAGACTCACGCAGGGGACAAACCCTGAAGATATAGAGCAGGGTAATACTTAATAAGTCCGTTCTTAACTAGCATCAGAGAACACACATAAAATTAGACTCAATCTCAGAGAATTTCTACTAATTTAAGAAGCCATTGATGTAAGAAAGGTCTCTAGCTCATCTCCATGTATAGACCTATCTATTACTTTAGGGAATGTGAAAAGACTGTGTGTGGTCAAATCTTTTGTGAGATCATTTAGTATATACAGGTGAATTTCCCTTTGAATATAAAGAATACTAAAGCACTTTTTTTTTTCTTAAATTATAAAGCACATTCAATGGCAGGAAATCTCATCCAGACTTTATCAATATATATGACATGGAAAATGTTGATACCTAAGTCATGCCTCAGTCTACAGAAAACCTCATAAAGTAGTGGCGCACAGCTAATGATTTAGCCAGGCACACCTTTGCATTCTGACCCATGTGAGTGATCTTGGCAAGACTCATTTGGACTTGATGTTTAACAGCACAGCAAGACACAAAATCAAGGCGGAGGAAATCTCGGCATGGAGGTGCTCAGCTCTCATCCTAGCACTCGGGGCAGTGTCAGATGCATCAGTGTGAGTTTGTGCTGACCTCTTCCAAATAGAGTGTTCTGGGCCAGCTAGGGATCACAGTTAAATCCTGTCATGAAAAAAGTGAGAAAATGTTAAATGGCAATAAAACCCATAAGAAAGAATATAAAGGACCTTTTAAATAGTACTTGAAACTCAACTGACATCAGAAACACAACAAAATACACTAAAGCGTAGGAGTGTGATACAGGAGTACAGGTGACACCTTACATCATCATATTACATCACCATGTTACATCATCAGGATGATTGCAGTATTTAGTTGTGGACACACACAGTAGGAACCCCATCAGTCTATAGGTTATAAAAGCTGCACTCACACTTTAGCAAGCATGACATCAAGTATGAAAGTGAAAACACATTTGAATGTAAAAAATGAGCTTGAGTGTGGCACGGTCACACATGCTTGTGAAACACACACATTTCCTGTTCTTCTGGGTTTGAGAGTTCTTACACATCACCTGGAGTTTCAACATTCATGCCCATGAGTCCATTTTTGGAGAATATAAAGCAATTCTGAAGAAGTTGCAGCAAATTGATCATGACTTTTTGAGTGCTGTCTGTAAAATCACACCTTGTTTCATAAGACAAGTTCTACATATGCAGGCCAGGCTGACTATGAATTTCTTGTATCATGGGCAGTTCTCATATTCACAGTCATACTGATGCAGGCTCTTGAGATCTTGGATTAGAGGAATGGTCTTCCGTGCAACTTTAGTATGTGACATTTTCAGTGAAATTTCAACATTTTTATACACCAAAAATTTGGGGGAGAAAATTCAGTTTATGTAACTTGCACGTTAATTTCCAGATGGAATTGTCTGCGATGGCATTGGAAATGAAGCAGCCAACTGTATTCTACCAAATAAACACAATGATGTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066829:ENSMUST00000086278:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACAAAGTGAGTAGCCTGGT
R:
TTTCCCACACTCTAAGCACGC
Band lengths:
342-1514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types