MmuINT0179918 @ mm9
Intron Retention
Gene
ENSMUSG00000066829 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr9:22081192-22085003:-
Coord C1 exon
chr9:22084897-22085003
Coord A exon
chr9:22083725-22084896
Coord C2 exon
chr9:22081192-22083724
Length
1172 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
ACAAATTCTTTTATCTTAAGGCA
3' ss Score
5.26
Exon sequences
Seq C1 exon
GTGTCAACAAAGTGAGTAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATTTCTGGCAAATTGAAATCAACAGCCATACAGCAAATGAAGAACTGGTTGAA
Seq A exon
GTAGGTAAAATTGATGTGAGCATTAACTATGGCTATATGTAGGGGGTCTTGATTGGGTTCATTTTCTCTTCCAGTGAAGGAGACCTTATGGGTATAACAATTATCATCAAAGGGAATATCAGACTGAGCAGTCAAGTCAACCAGTGAAGAAAGGTTATCATAGGGGTGAGGAAACACACACAACGAGGCATCTGGGGAAATAACTCTGCAGAGCTGAGGGGGCCCTCAGGAGCCTGAATGAGCTTCTCGTTGAGGGCTTGGGGGTTTCCAGGGTGTTTGAGGGCTCTCTCTCTCTCTCCTCTAATTTAGGGTTGATCAGTCTGAACAAAGAAAGAATGGCTAATAGAGCCAATGATTTGGTATGAACATGTACTGATCCATCCTTGAACTTGTTGGAGATCCATCAGCAAGGTGCCCTACTGGCGGGAAAAGAAGCCCACCAGGCCTTTCTTTTAAGCTTTTATCTCAGATCAAGGGAGTGAGGAAGAAGCTGCTATCTTGGAACTTCAGTATCTTTATTATCTAGTTCCAGCCCCTCTCCCAACTGTCCATCATCCAGATATTTGTCTAACTCCAGGTCTCTCAAAATTGTCTTTCATAGTTGAATATAAAGAGTGTAAACTATTTTAGGAATGTTTTCTCAGAAACTTAGTCTATGGCAAGATGAACTTCTCATTGGTGAACCTTACCAGATGTAGGCTAGAGAGGAATTGTTCATTTTAAAGTAATTGAAACCCTTCAGTTACCTGAGTCTCTGAGTATCCTTAACAGCAGCTAATTGTGTCTTTCTAAATATTCAGAATCAAGGAAAACCTACAAAGGAGGGCTATTGGCACAGAAGTTGTCATTTGTAGGGGAGCTGCAATGAGCTCAGTGAATATGGGGGATTCTTTGATGGGGCATCAAGTGAATATGGGGGATCCTTTGATGACGCATTAGTTCTTCAAGTCAAGGTGCAGATCAGGAAGCAGAGTTCCTAATACAATGTATGTGAGATAACATTCTTTCACTAAATTCAGTTAATGAAGTTGTATTTAACAGTGGAGAGAAATACTTCAATGTAGTCATTGTGAGAAATCTCATTAGGAAATCATGACAAGAAAAGCTCAGATAGTAAATTCTATGGGACATTCCCTGTGAAGATGAAGACTAACAAATTCTTTTATCTTAAG
Seq C2 exon
GCAGAACTGAAGATTCATGAGGAAATCCACCGAGGGGCCAAATCCTATGAATGTGAAGTGTGTTTGGAAGCATTTTACCTGAAGCCACAGTATAGCACAAAGCAGAGCTATCACACATGCGAGAATCCATGTGACTGTAAGAAGTGTAGAGAAGCTTTCTATCCTAAGTCTACCCTCAGTCAGTATCAGAGGCTTGAGAGAGGTGAGAAACCCCATGCGTGCTTAGAGTGTGGGAAATCCTTCTACTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACCGGTGAGAAGCCTTATGACTGTAAAGAGTGCAGGAAGGCTTTCTACAGCAAATCCCAGCTCAATGTGCATCTGAGAATTCACACCGGTGAGAAGCCTTATGAATGTAAAGACTGCAGGAAGGCTTTCTACCGCAATTCTGACCTCACTGTACATCAGAGAACTCATACAGGTGAGAAGCCCTATGAATGTAAAGTCTGCAGGAAAGCTTTCTACTGCAATTCACAGCTCACTGTACATCACAGGACTCATACAGGTGAGAAGCCTTATGAGTGTCAAGTATGCAATAAAGCTTTCTACTGCAAGTCACAACTCGCTGTACATCACAGGACTCATACGGGCGAGAAGCCTTATCAATGTAAAGAATGCAGGAAGGCATTCCAGTGTAGGTCAGACCTCACTCGACATCAGAGAACTCATACTGGTGAGAGGCCATATGAATGTCCCGAGTGCAGGAAAGCTTTCTACCGCAAGTCAGACCTCACAGTACATCAGAGAACACATACAGGGGAGAAGCCCTACGAATGTAAAGAGTGCAGGAAAGCTTTCTACTGTAATTCACAACTTACTGTACATCAAAGACAACACACAGGCGAGAAGCCTTATGAATGTAAAGACTGCGGGAAAGCTTTTCAGTGCAAATACGAACTCACTCGACATCAGAGAACACACACAGGCGAGAAGCCTTATGGATGTAGAGAGTGCAAGAAAGCTTTTTACACCAAGTCAGATCTCACTCGGCATCTAAAGACTCACGCAGGGGACAAACCCTGAAGATATAGAGCAGGGTAATACTTAATAAGTCCGTTCTTAACTAGCATCAGAGAACACACATAAAATTAGACTCAATCTCAGAGAATTTCTACTAATTTAAGAAGCCATTGATGTAAGAAAGGTCTCTAGCTCATCTCCATGTATAGACCTATCTATTACTTTAGGGAATGTGAAAAGACTGTGTGTGGTCAAATCTTTTGTGAGATCATTTAGTATATACAGGTGAATTTCCCTTTGAATATAAAGAATACTAAAGCACTTTTTTTTTTCTTAAATTATAAAGCACATTCAATGGCAGGAAATCTCATCCAGACTTTATCAATATATATGACATGGAAAATGTTGATACCTAAGTCATGCCTCAGTCTACAGAAAACCTCATAAAGTAGTGGCGCACAGCTAATGATTTAGCCAGGCACACCTTTGCATTCTGACCCATGTGAGTGATCTTGGCAAGACTCATTTGGACTTGATGTTTAACAGCACAGCAAGACACAAAATCAAGGCGGAGGAAATCTCGGCATGGAGGTGCTCAGCTCTCATCCTAGCACTCGGGGCAGTGTCAGATGCATCAGTGTGAGTTTGTGCTGACCTCTTCCAAATAGAGTGTTCTGGGCCAGCTAGGGATCACAGTTAAATCCTGTCATGAAAAAAGTGAGAAAATGTTAAATGGCAATAAAACCCATAAGAAAGAATATAAAGGACCTTTTAAATAGTACTTGAAACTCAACTGACATCAGAAACACAACAAAATACACTAAAGCGTAGGAGTGTGATACAGGAGTACAGGTGACACCTTACATCATCATATTACATCACCATGTTACATCATCAGGATGATTGCAGTATTTAGTTGTGGACACACACAGTAGGAACCCCATCAGTCTATAGGTTATAAAAGCTGCACTCACACTTTAGCAAGCATGACATCAAGTATGAAAGTGAAAACACATTTGAATGTAAAAAATGAGCTTGAGTGTGGCACGGTCACACATGCTTGTGAAACACACACATTTCCTGTTCTTCTGGGTTTGAGAGTTCTTACACATCACCTGGAGTTTCAACATTCATGCCCATGAGTCCATTTTTGGAGAATATAAAGCAATTCTGAAGAAGTTGCAGCAAATTGATCATGACTTTTTGAGTGCTGTCTGTAAAATCACACCTTGTTTCATAAGACAAGTTCTACATATGCAGGCCAGGCTGACTATGAATTTCTTGTATCATGGGCAGTTCTCATATTCACAGTCATACTGATGCAGGCTCTTGAGATCTTGGATTAGAGGAATGGTCTTCCGTGCAACTTTAGTATGTGACATTTTCAGTGAAATTTCAACATTTTTATACACCAAAAATTTGGGGGAGAAAATTCAGTTTATGTAACTTGCACGTTAATTTCCAGATGGAATTGTCTGCGATGGCATTGGAAATGAAGCAGCCAACTGTATTCTACCAAATAAACACAATGATGTTTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066829-Zfp810:NM_145612:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF079757=C1_4=WD(100=15.3),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF079757=C1_4=WD(100=13.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACAAAGTGAGTAGCCTGGT
R:
TTTCCCACACTCTAAGCACGC
Band lengths:
342-1514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: