RnoINT0168669 @ rn6
Intron Retention
Gene
ENSRNOG00000014331 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr8:23275936-23280855:-
Coord C1 exon
chr8:23280749-23280855
Coord A exon
chr8:23279471-23280748
Coord C2 exon
chr8:23275936-23279470
Length
1278 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ACAAATTTTTTTATCTTAAGGCA
3' ss Score
5.62
Exon sequences
Seq C1 exon
GTATCGACAAAGGGAATAGCCTGGTTGATACCATCCAGGAAAATGATAGCAGACATTTCTGGCAAATTGAAATCAACAGCCGTACATCAAATGAAGAACTGGTTGAA
Seq A exon
GTAAGTAAAATTGATGTGGGCATAAACTGTGGCTATATGTAGGGTTCTTGACTGGGTTCATTTTCTCCTCCAGTTTAGGAAACAGCAAACAGCATGAGTATAACAATTAGCATAAAAAAACAAACAAAAAACAAAAAAACAAAACGGGGGTTGGGGAGTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAACAAAACAAAACAAAAAAACAATTGGCATCAAAGGAAGTCTCAGACAGAGCAGACAAATCAACCAGTGAGCAAACGTTATCATTAGGGTGAGGAGACACAACGCACACGGAGAAATACCTCTGCAGAGCTGAGGGGACTCAGAAGCCTGAAGCCCAGCTTCTCATTGAGAGTCCAGGGGTTTCCAGGGTGTTTGAGGGATCTCCCTCCCCTAACTTAAGGTTTTTCAGTCTAAACAAAGAATGGCTAATAGAGCCAATGCTTTGGTGTGAACATGTTCTGATCCACTATTGAACTTGTTGGAGATCCATCAGCAAGGGGCCATACTAGAGGCAAAGAAGCCCATCAGGCCTCTCTTTAGAGCTGCCATGCTTTATTCAAATCAAGAGAGTGAGAAAGAAGCTGCCATCTTGGAAGTTCACTATCTTTATTACCTAGTTAGAGCCATTCTCCCAACTGTCCATCAACCAAGTAACTGTCTAACTCCAAGTCTCTCAAAATTGTATTTCATAGTTGAATATAAAGAGTGGAAACTATTTTAGAAATATTTTCTCAGAAACTTAGTCTATGGAAAGATGAACTTCTCATTGGTGAACCTGGTAAGATGTAGGCTAGTAATTGAAACCCTTCAGTTAGCCCAAGTCTCTGAGTATCCTTAACAGCAGTTAATCATGTCTTTTTAACTATTTATAATCAAGGAAAACCTACAAAGGGGGGCTCTTAACACAGAAGTTGTCATTTCCGGGGAGCTGTAATGAGCTCAGTAAATTCGGGAAATCCTTTGATGAGGCATCATTTATTCAAGTCAAGGTGCAGATTAGGAAGCAAAGTTTCTTTACAGTGTATGGGAGATAACATTCTTTGACTAAATTCAGAAAATGAAGTTATATTTAACAGTGGAGCGAAATATTTTAATGTAGTCATTGTTTGAAATCTCATTAGGAAATCACGACAAGCAAAGCTCAGACAGTAAAGTCTACAGGATGCTCCTATGGATATGAGGACTGTAACAAATTTTTTTATCTTAAG
Seq C2 exon
GCAGAACTGAAGATTCATGAGGAAATCCATCAAGGGACAAAGTCCTATGAATGTGAAGTATGTTTGGAAGCATTTTATCTGAAGCCACAGTATAGCACTGACCAGAGATACCACACATGCGAGAATCCATACAACTGTAAAAAATTTAGAGGGGCTTTCTATTCTAAGTCGACCTTCAGACCGTGTCAGAGGCTCGAGAGAGGTGAGAAACCCCACGCATGTATAGAGTGTGGGAAATCCTTCTATTGCAAGTCTCACCTCACTGTGCATCAGAGGACCCACACAGGGGAGAAGCCCTACGAATGTAATGACTGCAAGAAGGCTTTCTACAGCAGGTCCCAGCTCAATGTGCATCTGAGAACTCATACAGGTGAGAAACCCTATGAATGTAAGGAGTGCAGGAAGACTTTCTACCGCAATTCTGACCTCACAGTGCATCAGAGGACTCACACAGGCGAGAAGCCCTACGAATGCAAAGTGTGCAGTAAAGCCTTCTACTGCAATTCACAGCTCACTGTCCATCACAGGACCCATACAGGGGAGAAGCCTTATGAATGTCAAGTGTGCAATAAAGCCTTCTACTGCAAGTCACAGCTTGCTGTCCATCACAGGACCCATACGGGGGAGAAGCCTTATCAATGTCAGGAATGCAGGAAGGCATTCCAGTGCAGGTCAGACCTCACTCGGCATCTGAGAACTCATACAGGCGAGAGGCCCTATGGATGTACGGAGTGCAGGAAGGCTTTCTACCGCAAGTCAGACCTCACAGTGCATCAGAGGACACACACAGGCGAGAAGCCCTACGAATGCAAAGAGTGCAGAAAAGCCTTCTACTGCAATTCACAGCTCACTGTCCATCAAAGACAGCACACAGGGGAGAAGCCTTATGAGTGTAAAGACTGTGGGAAAGCCTTTCAGTGCAAATATGAACTCACTCGGCATCACAGAACACACACAGGTGAGAAACCGTATACATGTATGGAGTGCCAGAAAGGTTTTTACACCAAGTCAGATCTCTCTCGACATCTAAAAATTCATACAGATGACAAACCCTGAAGATATAGGAGACAGTAGTATTTAATAAGTCGTCCTTAACTGACATCAGAGAACACACTTAAAAACTTACCATGAAGTTAGACTTAATCTCAGAGAATTCAGACACATGCAAGAAACCATTGATGTCAGAAAAGTCTCTAGCTCATCTCCATGTGTAGACCAATACATTTAGGGAATGTGAAAACTGTGTGCTCAAATCTTTTGTGACATCATGTAGTATATACAGGTGAATTTCCCTTTGAATATAAAGAATACTAGAGCATTTTTATAAAAATCATAAAGTGCACATTCAGTGGGCAGGAAATCTTATCCAGACTTTTTCAATATATATGACATGGAAACTTTCAATACCTAAGTCAGGTCTCAGTCTGCAGGAAAACTCCTAAGGTATAGTAGTATACAGCAAATGATTTAGCCAGGTACGGCTTTTCATCCTGACTCTTGTGGGTGACCTTGGCAAGACTCATTTGCACCTGATGTTCAACAGCATAGCAAGCCATGAAATCAAAAGACGGGAAAGCTCAGATGGTGGTGGTCAGCTTTAATACGGGTACTCAGGGGGGCAGCATTGTAGGGATCAGTATGAGTTTGTGGCCAACCTCTTTAACAGAGTGTGTTCTGGGCCAGCTTAGGGATTACAGTGAAATTCTGTGATGAAAAAAGTGAGGAAATGTTAAGTGGCAATAAAACCCACCATAAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAAGAACCAAAACCCACCATAAGAGAATGCAGCGACTTTTTAAATAGTACTTGAAACTCAGCTGACATCAGAAACACAACAAAAATGCAGTAAAGCACAGGAGTGCGATATGAGAGAGTACAGGGGCCACACTACATCGTCAGTATAAGGACTTCAGTGTTGAGCTGTAGACACACACAGTAGAAACCCCATCAGTCCACAGGTTAGAAAAGCAGCACTCACACTTTAGCAAGCATGACATCAAGTGTGAAGGTTGAGAACACGTTTGGATTTAGAAACTGAATTGAGGTTGACTGTGGTTCAGTCACATGTGCCTGTGAAGCACATGCATTTCCTGTTCTTCTGGGTTTGAGACTTCTTACACATCACCTGGATTTTCAACACCCATGCCTATTTTTGAAAAGTATAAGCAGTCTGGAAGAAGTTGCAAAAAATCGATCATGCCTTTTTGAGCACTGTCAGTGAAATCACACCTTGTACAGTGAGACCAGATCTACATATGCAGGCCAGACTGACTTTGAACTCTTAGCATCGTGGCCAGTTCTCCTATTCACGGTCATACTGATTCATGCTCTTGAGATCTTGGATTAGTGAAAATTGTCTTCCGTGCAACTCTGTATATATCAGTCTGTGTACGTTGCATGTTAATTTCCAGGTGGAATTGTTTGAGATGGAAATGAAGCATCCCAACTCCATGATGCTACCAAATAAACACAACGATATTCCCAGCCACTGGACAGTAAGCTGCTTCTTTGGGCATTTCTTCTTCTCATAACTAGTTTGGTAGAAGTTAGTGAACATAGTAGACAAAACCAGCAATGCTAATTAACATCTCTTCCTACAGAATTTCTTCTCATGACATGGTTTTTTTCTATATGTTATTATATGTATTCAAATTTTGTCTCCAGAGCACTCAGCCTGACAATACAGGAAACATGTATACTTTGTATACGATGTAATAATGGAGGAAGGTGGAAGTGGCATGGTGCATGCCTTTGTATGTGTGTAGTTCTGATTGGATGTTCAGTATACGTAAGTGAGATGCATAGACTGTAACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATTGCAACTTATTCTATTTATTATCTTTCTGTCACTGTAAGTATCAGACACAAATGAAGTTTGAAGTAATTGTGTTGGATTGTGGTTTCAAAGGATTTTGTTCATGGTTACTTTGCCAGAGCAATATGAACAGTACTGTGGTGGCAGTAGTTGTGATAGAAGAGATTCCGCACATCATGTCGGGAAATGGACCAAAGAATAGACCATGTACCTATTACATCTTCTAATGTGTCACCCTGATTATATAAATTTAACTAGACACTACCTTCCAAAGTTTGTATCAGTGCTCATATTTGAATTCAAGTTCTGTGGGAGAGATTTCATGCAAAAACCAACACACATGCCAGGCAGTGGTGGCACACACTTTGAACCCCAGTGCTTGGGAGCGAGAGTCTGGGAATCTGTAATTTGAGGCCAGCCTGGCTTATAGAACTAGTTCCAAGACAACCAAGACTACACAAAGAAACCCTGTCATGAATTTTTAAATTAAAAAAATAAACAAAATTAAATAAAACCAAAATACACTACAAATATCAACCTTTAATAAAATTTTATTTATAAATTCTTGAATACGATGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014331:ENSRNOT00000019204:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCCAGGAAAATGATAGCAGAC
R:
TCCTCTGATGCACAGTGAGGT
Band lengths:
355-1633
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]