MmuALTD0016249-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000055102 | Zfp819
Description
zinc finger protein 819 [Source:MGI Symbol;Acc:MGI:1921650]
Coordinates
chr7:43607174-43609978:+
Coord C1 exon
chr7:43607174-43607274
Coord A exon
chr7:43607275-43607510
Coord C2 exon
chr7:43609786-43609978
Length
236 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
ACTTTCTGGTGTCTTCGTAGATT
3' ss Score
9.66
Exon sequences
Seq C1 exon
TGGATTCTGAACACTGGGGAATCCTCAGCGTCCACCCGGCGTGCCGCGTGCAGAGCTCTCTGAAGTGGCTGCGCAGGAAGGATGCTGGCTGCTGAGCGCTG
Seq A exon
GTTTGTGTTGAGTGATGACTGAGGCAGCTGTAGGGGGGTGCCGGTGCGTAGCTGGGGTGGGCGTCCTGTGGGGGTCGGGAGAGCAGGGTCGAGGGTGGCGTTGGAGCCGGCTACTGTGAACCTGGGACTGGTGAGTCTGTGAGGGCGACCGTGCTGCTTGCATAACTGGGAGTGTTTGCTTTAGACCATGACTGGCTGGAGTCCGGATCAGACACTGGCATGTGAGAGGCGAAAAA
Seq C2 exon
ATTCCTGAGTCAGGCCAAGACATTCATGCTGCTGACTTTCTAGCACAACCAAGCTGAGTTCTGCCTGTCAGCTCTACCCAAAGGCTCCACATGCTCACCTGAATCCTGAGGGAATCCAGACATGGCTGCTGACATGAATTTCTGTCAGAAGCTCCAGAGACTGGGAACAGAGGAGCAGGACGGGCCGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055102-0-1,1-1,2-1,3-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTCTGAACACTGGGGAA
R:
CTCACACGGCCCGTCCTG
Band lengths:
294-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types