MmuEX0053634 @ mm10
Exon Skipping
Gene
ENSMUSG00000055102 | Zfp819
Description
zinc finger protein 819 [Source:MGI Symbol;Acc:MGI:1921650]
Coordinates
chr7:43607225-43612109:+
Coord C1 exon
chr7:43607225-43607274
Coord A exon
chr7:43609786-43609978
Coord C2 exon
chr7:43611983-43612109
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTGGTGTCTTCGTAGATT
3' ss Score
9.66
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AGAGCTCTCTGAAGTGGCTGCGCAGGAAGGATGCTGGCTGCTGAGCGCTG
Seq A exon
ATTCCTGAGTCAGGCCAAGACATTCATGCTGCTGACTTTCTAGCACAACCAAGCTGAGTTCTGCCTGTCAGCTCTACCCAAAGGCTCCACATGCTCACCTGAATCCTGAGGGAATCCAGACATGGCTGCTGACATGAATTTCTGTCAGAAGCTCCAGAGACTGGGAACAGAGGAGCAGGACGGGCCGTGTGAG
Seq C2 exon
AGATTGGTGTCCTTTGAGGATGTAACTGTGAACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCCGCCCAGAGACGCCTGTACCAGGACGTGTTGCTGGAGATCTACAGCCACCTCTTGGTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055102_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTCTCTGAAGTGGCTGC
R:
CAAGAGGTGGCTGTAGATCTCC
Band lengths:
170-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types