BtaEX6083923 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040603 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr18:57900691-57904316:+
Coord C1 exon
chr18:57900691-57900775
Coord A exon
chr18:57902533-57902794
Coord C2 exon
chr18:57904190-57904316
Length
262 bp
Sequences
Splice sites
3' ss Seq
TGCGTTTACTGCCTTTCCAGGAT
3' ss Score
8.93
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GATTCGAATCGGAAGTGGCCCAGAGCGGCCATTTCGCTTCTGTTGTCAACTCTTCTAACCTGTGAATCGCCTGTGGGATGCTGAG
Seq A exon
GATTTCTAGTGTCCCTCCAGAGCCCCTGGGTCAGGCCACATCACGGAGACTGCAGGATCTCCCTACACAGCTCAGGTCGACTCTTCCTAGCAGCTCTGATTGGAGCCTTCTGATGCCCACCCAGCTGCAGGCTCCTGGAAAGAGTGTTGTTGTCAGCAAGAGAGACCAAGAATTGAAGCCCAGAAGGGACATGCTTGCTGACATGAATTTGCCCCAGAGGCCCCAGGTCTTGGGTTTAGAGGAGCAGGATGTATCGTGTGAG
Seq C2 exon
GGGTTAGTGTCTTTTGAGGATGTGACCATGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGACACCTGTATCAGGATGTGATGCTGGAGATCTACAGCCACTTTTTCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040603-'0-2,'0-0,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.156 C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCGAATCGGAAGTGGCCC
R:
CCACAGAGAAAAAGTGGCTGT
Band lengths:
212-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]