HsaEX0073103 @ hg38
Exon Skipping
Gene
ENSG00000105497 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:HGNC:12964]
Coordinates
chr19:51571298-51581517:+
Coord C1 exon
chr19:51571298-51571475
Coord A exon
chr19:51573150-51573401
Coord C2 exon
chr19:51581391-51581517
Length
252 bp
Sequences
Splice sites
3' ss Seq
GTACTCATTGCTTTTCCAAGGCT
3' ss Score
3.85
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTTGTTAAGTGGATCTAAGCCTATGTCGCTTACTGGACGCTGAAGTGATTGGGAATATTAGCAGTGGGGGTTCTGTAGGGTCAGGAAGGGGCGGCTGGCTTTGGGGGAGTGATGAGGGGCTTGTTGGGGGTGGGGGTGCGTGATAAAGGGATTTCTCGGCTGAAGACGAGGCTGTGAG
Seq A exon
GCTTCTGCAGAACCCCCAGGTCAGGCCACATCATTGAGGCTGCAGGATCTCTCTTCATAGCCCAGTACGACTCTCCGCCGTGTCCCTGGTTGGAAAATCCAAACACCTATCCAGCTTCTGGCTCCTGGGAAAAGTGGAGTTGTCAGCAAGAGAGACCGAGAGTAGAAGCCCAGAGTGGAGATGCCTGCTGATGTGAATTTATCCCAGAAGCCTCAGGTCCTGGGTCCAGAGAAGCAGGATGGATCTTGCGAG
Seq C2 exon
GCATCAGTGTCATTTGAGGACGTGACCGTGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTCTATAGCCATCTCTTCGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105497_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.726 C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATCTAAGCCTATGTCGCT
R:
CCACTGCGAAGAGATGGCTAT
Band lengths:
298-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development