MmuEX0053585 @ mm10
Exon Skipping
Gene
ENSMUSG00000030469 | Zfp719
Description
zinc finger protein 719 [Source:MGI Symbol;Acc:MGI:2444708]
Coordinates
chr7:43579610-43586480:+
Coord C1 exon
chr7:43579610-43579853
Coord A exon
chr7:43584068-43584296
Coord C2 exon
chr7:43586354-43586480
Length
229 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTGATATCTTTGCAGACC
3' ss Score
9.8
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACATCCGCTCAGATCTTAAAGTAGTTCGCCTCTCCTGTCGTTGCCAGGGTAGCGTGGGTGTTTGGAATCCGAACCCATGGAATTGTGGGTGTCTGTGGGCGGAAGTCTCGCAGTCCTGGCGTGCCGTGTGCAGAGCTTCTCTAAGGTGTAATGTGAGGTGAGTGGATGTGGAGCAGAGGACGCTGTGCTGCTGAGCGCCGGTTTGTGCTGAGTGATGGTTGAATCGGCCCCAGGGGGGGATGAG
Seq A exon
ACCTCTGGGTGAGGCTAAGCCATTCATGCCGCCAATTTTCTCAACATAACCAAGTTGGCCTCTGCCCCACAACTCTACAAGAATCGTCCACATGCTGACCTATCTTCAGAATCCTGAGAAAATTAGAGAGAGACCAAGAGTAGAAACCACAGAGGACATGCCTACTGATATGAATTTCTGCCAGATGCCCCAGCAGTTGGGAGCAGAGGAGCAGGATGGATTGTGTGAG
Seq C2 exon
AGATTGGTGTCCTTTGATGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCCGCCCAGAGACGCCTGTACCAGGACGTGATGCTGGAGATCTACAGCCACCTCTTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030469_MULTIEX1-1/3=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.511 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCGTGGGTGTTTGGAAT
R:
AGATCTCCAGCATCACGTCCT
Band lengths:
303-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types