Special

MmuEX0053585 @ mm9

Exon Skipping

Gene
ENSMUSG00000030469 | Zfp719
Description
zinc finger protein 719 [Source:MGI Symbol;Acc:MGI:2444708]
Coordinates
chr7:50834980-50841850:+
Coord C1 exon
chr7:50834980-50835136
Coord A exon
chr7:50839438-50839666
Coord C2 exon
chr7:50841724-50841850
Length
229 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTGATATCTTTGCAGACC
3' ss Score
9.8
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACATCCGCTCAGATCTTAAAGTAGTTCGCCTCTCCTGTCGTTGCCAGGGTAGCGTGGGTGTTTGGAATCCGAACCCATGGAATTGTGGGTGTCTGTGGGCGGAAGTCTCGCAGTCCTGGCGTGCCGTGTGCAGAGCTTCTCTAAGGTGTAATGTGAG
Seq A exon
ACCTCTGGGTGAGGCTAAGCCATTCATGCCGCCAATTTTCTCAACATAACCAAGTTGGCCTCTGCCCCACAACTCTACAAGAATCGTCCACATGCTGACCTATCTTCAGAATCCTGAGAAAATTAGAGAGAGACCAAGAGTAGAAACCACAGAGGACATGCCTACTGATATGAATTTCTGCCAGATGCCCCAGCAGTTGGGAGCAGAGGAGCAGGATGGATTGTGTGAG
Seq C2 exon
AGATTGGTGTCCTTTGATGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCCGCCCAGAGACGCCTGTACCAGGACGTGATGCTGGAGATCTACAGCCACCTCTTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030469_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=0.541 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NO

							
C2:
PF0135222=KRAB=WD(100=95.3)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000050968





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000050968f2730A, ENSMUSP00000126981
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr19:51573150-51573401 
HIGH PSI
HsaEX0073103
(ZNF175)
Human
(hg19)
chr19:52076413-52076654 
HIGH PSI
HsaEX0073103
(ZNF175)
Rat
(rn6)
chr1:98616983-98617178 
Cow
(bosTau6)
chr18:57902533-57902794 
HIGH PSI
BtaEX6083923
(ZNF175)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACATCCGCTCAGATCTTAAAGT

				
R: 
CCACTGACAAGAGGTGGCTG

				
Band lengths: 
284-513

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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